Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1502
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5XDA4 Cluster: Transcriptional regulator; n=37; Strept...    34   1.5  
UniRef50_Q23CN3 Cluster: Putative uncharacterized protein; n=1; ...    33   3.6  
UniRef50_UPI000065D3A6 Cluster: Formin-like protein 1 (Leukocyte...    32   6.2  
UniRef50_Q8IE41 Cluster: Putative uncharacterized protein MAL13P...    32   6.2  
UniRef50_A0BZM0 Cluster: Chromosome undetermined scaffold_14, wh...    32   6.2  
UniRef50_Q4S986 Cluster: Chromosome 3 SCAF14700, whole genome sh...    32   8.2  
UniRef50_Q26008 Cluster: DNA-directed RNA polymerase; n=2; Plasm...    32   8.2  
UniRef50_A7SCC6 Cluster: Predicted protein; n=1; Nematostella ve...    32   8.2  

>UniRef50_Q5XDA4 Cluster: Transcriptional regulator; n=37;
           Streptococcus|Rep: Transcriptional regulator -
           Streptococcus pyogenes serotype M6
          Length = 328

 Score = 34.3 bits (75), Expect = 1.5
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +1

Query: 232 RVDRHALYHLVLISNSTKTSNYTQYGYIARTHIRTTVTSSRSDQSEREPT---LV*FVVS 402
           +V++   Y ++L+ N  +T NY  Y  + +  +   + SSR+  ++R  T   +  F++S
Sbjct: 187 KVEKWGYYEILLLGNCVRTINYNSYFLLTKEMLNNYIYSSRNKTNKRIVTQLAINCFILS 246

Query: 403 IRKKK 417
           I K++
Sbjct: 247 INKEE 251


>UniRef50_Q23CN3 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1491

 Score = 33.1 bits (72), Expect = 3.6
 Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
 Frame = +1

Query: 262 VLISNSTKTSNYTQYGYIARTHIR--TTVTSSRSDQSEREPTLV*FVVSIRKKKIKMHTQ 435
           + I+ ST    +T+   I  + ++    +   ++DQ +++ T   F V ++  +++   Q
Sbjct: 400 ITINISTTNQIHTENNQILSSQLQDNNNIYQIKTDQQQQQLTFPQFKVKMQGPQLQQQQQ 459

Query: 436 QQQQKNVLRKSR 471
           QQQQK + R+ +
Sbjct: 460 QQQQKQIQRRDK 471


>UniRef50_UPI000065D3A6 Cluster: Formin-like protein 1 (Leukocyte
           formin) (CLL-associated antigen KW- 13).; n=1; Takifugu
           rubripes|Rep: Formin-like protein 1 (Leukocyte formin)
           (CLL-associated antigen KW- 13). - Takifugu rubripes
          Length = 925

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -3

Query: 407 RIDTTNQTRVGSRSDWSERDDVTVVRMCVRAIYPY 303
           R+ +T   ++  +S  S+RDDV V  MC+RAI  Y
Sbjct: 166 RLSSTLGNKIYKKSSSSQRDDVHVCIMCLRAIMNY 200


>UniRef50_Q8IE41 Cluster: Putative uncharacterized protein
           MAL13P1.151; n=1; Plasmodium falciparum 3D7|Rep:
           Putative uncharacterized protein MAL13P1.151 -
           Plasmodium falciparum (isolate 3D7)
          Length = 2213

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 359 TNQNESPLSSDSSCLFVKKKSKCIHNNNNKKMCYANRVRHC 481
           +N + +   S+SSC    K +   +NN+NK MC  N V+ C
Sbjct: 754 SNSSSNSSRSNSSC----KHNNIYNNNHNKHMCIKNNVKEC 790


>UniRef50_A0BZM0 Cluster: Chromosome undetermined scaffold_14, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_14,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 221

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 17/63 (26%), Positives = 35/63 (55%)
 Frame = -2

Query: 192 FIIELYFEYLQLRECNIGMYVMFVIYLICLFLLTNMFTRTEYSASH*CHSRYVFKRKVND 13
           F  + YF ++ L+      Y++F+ YL+C   L+ + ++ EY ++    S +  K + ND
Sbjct: 150 FCNQFYFGFM-LKSHFKQYYLLFIAYLLCKMFLSLLNSKLEYFSNLSTGSIFSIKFRSND 208

Query: 12  FEK 4
           F++
Sbjct: 209 FKQ 211


>UniRef50_Q4S986 Cluster: Chromosome 3 SCAF14700, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 3 SCAF14700, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 1204

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -3

Query: 407 RIDTTNQTRVGSRSDWSERDDVTVVRMCVRAIYPY 303
           RI +T  +++  +S   +RDDV V  MC+RAI  Y
Sbjct: 195 RISSTLGSKIYKKSSSGQRDDVHVCIMCLRAIMNY 229


>UniRef50_Q26008 Cluster: DNA-directed RNA polymerase; n=2; Plasmodium
            falciparum|Rep: DNA-directed RNA polymerase - Plasmodium
            falciparum
          Length = 2910

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +2

Query: 362  NQNESPLSSDSSCLFVKKKSKCIHNNNNKKMCYANR 469
            N+N+S + SDS    V    K I N NNK   Y NR
Sbjct: 2494 NKNDSDIDSDSESEMVSSNKKEIININNKDNYYTNR 2529


>UniRef50_A7SCC6 Cluster: Predicted protein; n=1; Nematostella
            vectensis|Rep: Predicted protein - Nematostella vectensis
          Length = 1652

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +1

Query: 187  DKLSQNNSA--TNMIT*RVDRHALYHLVLISNSTKTSNYTQYGYIARTHIRTTVTSSRSD 360
            DK S+ +S   T  +    +RH  + L+  SN + T + ++   +AR+  R+   S+  +
Sbjct: 820  DKFSRRDSQHKTTAVVSSSERHGEHSLINSSNHSYTQSNSKNTLVARSRRRSHARSTGDE 879

Query: 361  QSEREPTLV 387
            ++E+E  LV
Sbjct: 880  ETEKETGLV 888


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 424,191,112
Number of Sequences: 1657284
Number of extensions: 7777427
Number of successful extensions: 19478
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19439
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)