Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1502
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    28   0.054
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    26   0.22 

>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 27.9 bits (59), Expect = 0.054
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 380 LSSDSSCLFVKKKSKCIHNNNNKKMCYANRVRHC 481
           +SS S C   K   +C+ N  N+  C A R+R C
Sbjct: 36  ISSISEC---KNNGECVINKKNRTACKACRLRKC 66


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 0.22
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 259 LVLISNSTKTSNYTQYGYIARTHIRTTVTSSRSDQSER 372
           LVL   S+ ++ +T++    RTH R T TS  +  + R
Sbjct: 257 LVLAGTSSPSNRFTRHLIQRRTHTRHTTTSHNTRGTPR 294


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,957
Number of Sequences: 336
Number of extensions: 2029
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)