Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1502
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.30 
SB_31705| Best HMM Match : Exo_endo_phos (HMM E-Value=1.1)             29   2.8  
SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_10127| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  

>SB_54822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1652

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +1

Query: 187  DKLSQNNSA--TNMIT*RVDRHALYHLVLISNSTKTSNYTQYGYIARTHIRTTVTSSRSD 360
            DK S+ +S   T  +    +RH  + L+  SN + T + ++   +AR+  R+   S+  +
Sbjct: 820  DKFSRRDSQHKTTAVVSSSERHGEHSLINSSNHSYTQSNSKNTLVARSRRRSHARSTGDE 879

Query: 361  QSEREPTLV 387
            ++E+E  LV
Sbjct: 880  ETEKETGLV 888


>SB_31705| Best HMM Match : Exo_endo_phos (HMM E-Value=1.1)
          Length = 287

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +1

Query: 253 YHLVLISNSTKTSNYTQYGYIARTH----IRTTVTSSRSDQSEREPTLV*F 393
           Y + + +   +T++  QY ++ R+     +RT V S   D  EREP +V F
Sbjct: 169 YDMTISARLGRTTSKEQYAFVYRSELFSVVRTYVYSDPKDLFEREPYIVHF 219


>SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 281 LKHLIILNTDISRAHTFAQQ*RHRVPTNQN 370
           ++H + +N DI  A++  Q  RH V  NQ+
Sbjct: 154 IRHAVSVNKDIRHAYSVNQDIRHAVSVNQD 183



 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 281 LKHLIILNTDISRAHTFAQQ*RHRVPTNQN 370
           ++H + +N DI  A +  Q  RH V  NQN
Sbjct: 234 IRHAVSINQDICHAGSVNQDIRHAVFVNQN 263


>SB_10127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 368 NESPLSSDSSCLFVKKKSKCIHNNNNKKMC 457
           NE P+S DS    +KK+SK      NKK C
Sbjct: 174 NEMPISGDS----IKKQSKVRSKRRNKKSC 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,685,351
Number of Sequences: 59808
Number of extensions: 264361
Number of successful extensions: 595
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)