Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1502
         (499 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X14396-1|CAA32569.1|  281|Drosophila melanogaster sodium channel...    28   8.1  
AE013599-3978|AAM70798.1| 1618|Drosophila melanogaster CG9071-PA...    28   8.1  
AE013599-3977|AAF47291.4| 2327|Drosophila melanogaster CG9071-PB...    28   8.1  

>X14396-1|CAA32569.1|  281|Drosophila melanogaster sodium channel
           protein protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 156 RECNIGMYVMFVIYLIC-LFLLTNMF 82
           RE N+  Y+ FVI+++C  F   N+F
Sbjct: 243 REANLYAYIYFVIFIVCGSFFTLNLF 268


>AE013599-3978|AAM70798.1| 1618|Drosophila melanogaster CG9071-PA,
            isoform A protein.
          Length = 1618

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 156  RECNIGMYVMFVIYLIC-LFLLTNMF 82
            RE N+  Y+ FVI+++C  F   N+F
Sbjct: 1127 REANLYAYIYFVIFIVCGSFFTLNLF 1152


>AE013599-3977|AAF47291.4| 2327|Drosophila melanogaster CG9071-PB,
            isoform B protein.
          Length = 2327

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 156  RECNIGMYVMFVIYLIC-LFLLTNMF 82
            RE N+  Y+ FVI+++C  F   N+F
Sbjct: 1836 REANLYAYIYFVIFIVCGSFFTLNLF 1861


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,396,781
Number of Sequences: 53049
Number of extensions: 375680
Number of successful extensions: 1480
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1763278080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)