Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1502
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical pr...    31   0.35 
AL132952-5|CAB61137.1|  498|Caenorhabditis elegans Hypothetical ...    29   1.9  
AF068718-5|AAC17768.1|  320|Caenorhabditis elegans Hypothetical ...    29   2.5  
U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in bl...    28   4.3  
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    27   7.6  
X78553-1|CAA55296.1|  543|Caenorhabditis elegans cytoplasmic int...    27   7.6  
AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical...    27   7.6  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    27   7.6  
AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear recep...    27   7.6  
AL032623-4|CAA21510.1|  244|Caenorhabditis elegans Hypothetical ...    27   10.0 
AL032623-3|CAA21509.1|  317|Caenorhabditis elegans Hypothetical ...    27   10.0 
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    27   10.0 

>U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical
           protein C04E7.4 protein.
          Length = 542

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
 Frame = +1

Query: 214 TNMIT*RVDRHALYHLVLISNSTKTSNYTQYGYIARTHIRTTVTS----SRSDQSEREPT 381
           T  +T R+  +  Y    ISN ++     Q+  +   H  T  +S    S  DQS   P 
Sbjct: 421 TKPLTLRLGHNEFY----ISNMSEQDQLNQFSSLEDHHHETPTSSGNEVSNKDQSVNIPP 476

Query: 382 LV*FVVSIRKKKIKMHTQQ-QQQKNVLRKSRKTLLGLV 492
           +V  + S R K++  HT Q   QK + +  +  +L ++
Sbjct: 477 VVDEIRSSRMKRLVNHTSQLDAQKKIFQTKQARILKML 514


>AL132952-5|CAB61137.1|  498|Caenorhabditis elegans Hypothetical
           protein Y51H4A.5 protein.
          Length = 498

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 162 QLRECNIGMYVMFVIYLICLFLLTNMFTRTEYSASH 55
           +L  C + +  +F +Y+ C  + T+   R EY+ SH
Sbjct: 3   RLNMCQLYLLHLFFLYVCCWIVGTSALGRAEYTCSH 38


>AF068718-5|AAC17768.1|  320|Caenorhabditis elegans Hypothetical
           protein R01B10.4 protein.
          Length = 320

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -2

Query: 246 MAVYTLSYHVRCTIVLR*FIIELYFEYLQLRECNIGMYVMFVIYLICLFLLTNMFTRTE 70
           M  +   Y++ C IV       LY  +L  R+ N+G      I LI L +  N+ T  E
Sbjct: 211 MQNFDYGYNMTCCIVFSLITTCLYVHHLYYRKRNLGSLQESDIVLIRLIIWANLSTALE 269


>U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 2 protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 198 SEQ*CNEHDNLTCRPPC 248
           S Q CN+H NL C+P C
Sbjct: 196 SVQQCNQHCNLECQPTC 212


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 391 IRREWALVLIGRNAMTSLLCECVCARY 311
           + ++  + LI +N+ ++  C C+C RY
Sbjct: 478 VPKDMLMKLIQKNSRSTCTCSCMCGRY 504


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 391 IRREWALVLIGRNAMTSLLCECVCARY 311
           + ++  + LI +N+ ++  C C+C RY
Sbjct: 441 VPKDMLMKLIQKNSRSTCTCSCMCGRY 467


>X78553-1|CAA55296.1|  543|Caenorhabditis elegans cytoplasmic
           intermediate filamentprotein protein.
          Length = 543

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 283 KTSNYTQYGYIARTHIRTTVTSSR 354
           +T  Y  +G   R+HI+TTV SSR
Sbjct: 520 ETFLYNSHGIEKRSHIQTTVASSR 543


>AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical
           protein Y71A12B.17 protein.
          Length = 913

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 383 RVGSRSDWSERDDVTVVRMC 324
           +VG RSDW E   + VV MC
Sbjct: 651 KVGLRSDWFEHQAMPVVDMC 670


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 391 IRREWALVLIGRNAMTSLLCECVCARY 311
           + ++  + LI +N+ ++  C C+C RY
Sbjct: 478 VPKDMLMKLIQKNSRSTCTCSCMCGRY 504


>AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 519

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 391 IRREWALVLIGRNAMTSLLCECVCARY 311
           + ++  + LI +N+ ++  C C+C RY
Sbjct: 180 VPKDMLMKLIQKNSRSTCTCSCMCGRY 206


>AL032623-4|CAA21510.1|  244|Caenorhabditis elegans Hypothetical
           protein Y43F8B.2b protein.
          Length = 244

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 349 MTSLLCECVCARYIRIEYN*MF*SNLKLILDDITHG 242
           +TSL  +C+   + R+E    +  +L L++DDI+ G
Sbjct: 137 ITSLRSDCMVGDFTRLELFTKYYDSLYLLMDDISPG 172


>AL032623-3|CAA21509.1|  317|Caenorhabditis elegans Hypothetical
           protein Y43F8B.2a protein.
          Length = 317

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 349 MTSLLCECVCARYIRIEYN*MF*SNLKLILDDITHG 242
           +TSL  +C+   + R+E    +  +L L++DDI+ G
Sbjct: 210 ITSLRSDCMVGDFTRLELFTKYYDSLYLLMDDISPG 245


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 365  QNESPLSSDSSCLFVKKKSKCIHNNNNKKMCYANRVRHC 481
            + ++P S  + C   +KK    ++ N+K M    R+R C
Sbjct: 1043 EGDTPFSQRAECPIEEKKQTAKYDENDKFMFPLGRLRFC 1081


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,161,246
Number of Sequences: 27780
Number of extensions: 197281
Number of successful extensions: 594
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)