Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1498
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0451 + 23021139-23021269,23021366-23021498,23021594-230217... 34 0.11
07_03_1048 - 23545060-23546381,23546479-23546554 31 0.60
07_01_0408 - 3137705-3138017,3139361-3139371,3140693-3140770,314... 30 1.8
03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169 30 1.8
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228... 29 2.4
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 29 2.4
02_03_0167 - 15923872-15925683 29 2.4
10_08_0738 - 20212220-20212282,20212387-20212593,20212690-202128... 29 3.2
04_04_0512 + 25806599-25808080 29 3.2
04_01_0471 + 6099768-6100094,6100384-6100416 29 3.2
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 29 3.2
02_02_0315 + 8872199-8872815,8873141-8873243,8873346-8873405,887... 29 3.2
11_01_0344 + 2558950-2558971,2560389-2560465,2560543-2560833 29 4.2
01_01_0539 + 3952039-3952219,3952295-3952984,3953115-3953191,395... 29 4.2
12_02_1265 - 27435096-27437675 28 5.6
10_01_0270 - 2876907-2877547,2877838-2878012 28 5.6
01_01_0136 + 1237623-1237820,1238313-1239001,1239978-1240308,124... 28 5.6
08_01_0397 - 3509186-3510291,3510322-3512335 28 7.4
03_05_0825 - 27986393-27986767,27987541-27987625,27987936-279880... 28 7.4
02_03_0131 - 15576422-15577021 28 7.4
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 27 9.8
01_07_0014 - 40455673-40455723,40455815-40455892,40455987-404560... 27 9.8
01_05_0540 + 23069954-23070103,23070170-23070251,23070298-230703... 27 9.8
>02_04_0451 +
23021139-23021269,23021366-23021498,23021594-23021789,
23023376-23023737,23024049-23024363
Length = 378
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 89 PKHRSP*RAFSSSNGTLYPSIESCCSSTDSRSPFDSTCRSYCSRRPRGTFFVYT-CF 256
P+ +P R FSS N L P S SR T + +PRG FF ++ C+
Sbjct: 322 PEPLAPPRTFSSENAILPPESPGTSSLMASRGDLGDTPKGKMEDKPRGFFFCFSQCY 378
>07_03_1048 - 23545060-23546381,23546479-23546554
Length = 465
Score = 31.5 bits (68), Expect = 0.60
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 572 SIAGSCCPRRPPQLHSAPSSP 634
++AG CCPRR P PSSP
Sbjct: 331 ALAGGCCPRRAPAPADHPSSP 351
>07_01_0408 -
3137705-3138017,3139361-3139371,3140693-3140770,
3141105-3141206,3141309-3141380,3141484-3141558
Length = 216
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 159 AAPVLTHAAPLIQHAGPIVHAAPVEHSSYIHASPVVQHFSPVQHAPVVHHAA 314
AA + H P+I+ A P AA + +H PV++ +P A AA
Sbjct: 9 AAAIAPHLVPVIRGATPFAPAAATAAAISLHLVPVIRGATPFSSAVAAAAAA 60
>03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169
Length = 515
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 91 WEDTAWPWPSSITPPWQIAK 32
W+D WPSS + PW++ K
Sbjct: 227 WQDVLLLWPSSSSSPWELTK 246
>06_01_0318 -
2284481-2284594,2285340-2286044,2286589-2286609,
2287186-2287257,2287762-2287842,2288059-2288133,
2288197-2288484
Length = 451
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/79 (27%), Positives = 30/79 (37%)
Frame = -3
Query: 420 GTCDRRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG*SVGLLAKHVYT 241
G C R PRR R+HD DRS R + + H + +
Sbjct: 272 GECAR--SSPRRRRSRSHERDHDSERDRSDRDRGRHKDREHDRHAREDRDRDYRRSSYSS 329
Query: 240 KNVPRGRREQ*DRHVESKG 184
+NV R RE+ DR + G
Sbjct: 330 RNVDRQGRERRDRDSDRHG 348
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 334 TPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKP 432
TP M+ + P +M S + + TPA+T+P T P
Sbjct: 315 TPFMNPVTAP-TMPSPVTNPATTPAVTNPTTMP 346
>02_03_0167 - 15923872-15925683
Length = 603
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -1
Query: 407 AGVGILDGI*ELILRGSMIFDMIGVFDGNWNRSVVHDWSMLHRAEVL--DYWRSMYIRRM 234
AG+ +L+ + +++RGS + +FDG N+SVV W+ L +L DY +
Sbjct: 187 AGLPVLNSVLTMLVRGSHLDAARLLFDGICNKSVV-TWTALASGYLLRGDYLEVFDLFNR 245
Query: 233 FHGGGVN 213
G G N
Sbjct: 246 MRGVGKN 252
>10_08_0738 -
20212220-20212282,20212387-20212593,20212690-20212819,
20212919-20213089,20213311-20213433,20213517-20213618,
20214123-20214880
Length = 517
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 88 EDTAWPWPSSITPPWQIAKIEQTTAIL 8
E WP P S PP ++ K EQT ++
Sbjct: 136 EAARWPPPPSFQPPIEVIKAEQTAPLI 162
>04_04_0512 + 25806599-25808080
Length = 493
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/47 (21%), Positives = 24/47 (51%)
Frame = +3
Query: 315 IPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSQHETRDGDVVKG 455
+P V +S+ + +HA ++ P GD +++H++ + + G
Sbjct: 392 LPEYVSNSEELSNHATFNHKVEEDSSSPAAGDRENEHDSSNSATIDG 438
>04_01_0471 + 6099768-6100094,6100384-6100416
Length = 119
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 23 LLDFGYLPRWCYRRGPRPC-CVFPKHR 100
+L+F +LPR RRG R C V P H+
Sbjct: 67 VLNFAFLPRTSLRRGARACRIVVPHHK 93
>03_01_0270 -
2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = -3
Query: 396 DPRRNMRTHTSREH-DLRHDRSV----RRQLESQRG 304
+PR R TSR+H RHDRSV R Q S RG
Sbjct: 292 EPRSKRRRSTSRDHYQERHDRSVSPSSREQRHSYRG 327
>02_02_0315 +
8872199-8872815,8873141-8873243,8873346-8873405,
8873558-8873632,8873718-8873792,8873876-8873956,
8874466-8874657,8874762-8874947,8875047-8875094
Length = 478
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 144 PVLSHAAPVLTHAAPLIQHAGPIVHAAPVEHSSYIHASPVVQHFSPVQHAP 296
P ++ AAP AAP A AAPVE +S A SP + P
Sbjct: 353 PAITEAAPATAEAAPAAATATAAPPAAPVEETSTEAAPAEPTPLSPYTNYP 403
>11_01_0344 + 2558950-2558971,2560389-2560465,2560543-2560833
Length = 129
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = -1
Query: 269 LDYWRSMYIRRMFHGGGV----NNRTGMLNQRGCVSQYWSSMTQYWGIMCRCLMRR 114
LD+WR +RR+ G V G+L Q G + + Q G +CRCL R
Sbjct: 32 LDWWRCARVRRLSVRGDVADADGGEDGVLGQAGGARLHGAIRVQD-GEVCRCLQLR 86
>01_01_0539 +
3952039-3952219,3952295-3952984,3953115-3953191,
3953356-3953931
Length = 507
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/92 (23%), Positives = 30/92 (32%)
Frame = +3
Query: 60 DEGHGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEHS 239
DE H + R PS TP L + Q AGP ++ A
Sbjct: 309 DEVKSHLQKYRLHTRRPMPSPAPPTAATPQLVVLGGIWVPPEYATQAAGPAIYGAHPATQ 368
Query: 240 SYIHASPVVQHFSPVQHAPVVHHAAIPIAVEH 335
+ A+ Q + H + HH A V H
Sbjct: 369 PHYTAAVAAQEYYHHHHHHLQHHPAAAALVHH 400
>12_02_1265 - 27435096-27437675
Length = 859
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -1
Query: 230 HGGGVNNRTGMLNQRGCVSQYWSSMTQY-WGIMCRCLMRRLVMANDALGRHSMAVALVYN 54
HGGG + L V QY+ ++ Q WG M ++ L DA + + + L+++
Sbjct: 287 HGGGPQSNLRSLKSLRSVEQYYHTLQQMKWGPMTEHVLDNLHCKIDAF-QANQVLKLLHD 345
Query: 53 TTLA 42
T+A
Sbjct: 346 HTIA 349
>10_01_0270 - 2876907-2877547,2877838-2878012
Length = 271
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Frame = +3
Query: 153 SHAAPVLTHAAP-LIQHAGPIVHAAPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAV 329
S AP H P H P V++ P +Y H +PV + P P+ H A V
Sbjct: 174 SPPAPAAYHKPPPSYTHPAPPVYSYPTP--AYSHPTPVYKQPLPTPSPPIYHPPAEEKKV 231
Query: 330 EHSDHVE 350
D E
Sbjct: 232 AMQDDAE 238
>01_01_0136 +
1237623-1237820,1238313-1239001,1239978-1240308,
1240614-1241351
Length = 651
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 146 SIESCCSSTDSRSPFDSTCRSYCSRRPRG--TFFVYTCFASSPTLQPCATCSSRAPRC 313
++ S C+ D+ +T + C+ P G ++ VY A PCA CS P C
Sbjct: 430 AVYSHCAELDA---IVATAKVPCAHAPYGCSSYVVYAGVADHQRACPCAPCSCPEPGC 484
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -3
Query: 450 SRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRHDRSVR-RQLESQRGARLE 292
SRHHH R DR RR+ RE +R R ++ E +R R E
Sbjct: 39 SRHHHREDRDDDRDRDRDRERRHREKERDREERKAREREEREKEKERERARRRE 92
>03_05_0825 -
27986393-27986767,27987541-27987625,27987936-27988036,
27988144-27988227,27988868-27988939,27989203-27989319,
27989386-27989526,27989951-27990122,27990324-27990372,
27990773-27990821,27991240-27991270,27991301-27991371
Length = 448
Score = 27.9 bits (59), Expect = 7.4
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Frame = -3
Query: 390 RRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG*S-VGLLAKHVYTKNV---PRG 223
RR T ++ + ++ +V RQLE + AR G S + + K + T P+
Sbjct: 333 RRAELTQFQKQVEEQYMSNVERQLERMQNARNARRGNGPSNMQEMDKELDTHRAEHGPKT 392
Query: 222 RREQ*DRHVESKGLRESVLEQH--DSILGYNVPLLDEKARHGE 100
RR + + + + +E D +LG N P+ DE+ + E
Sbjct: 393 RRVLEGGNDDEDDMDDMAVEDELMDEVLGINEPISDEQTKPSE 435
>02_03_0131 - 15576422-15577021
Length = 199
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -3
Query: 426 RVGTCDRRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGAR 298
R G DR PR R H R+ D DR R E +RG R
Sbjct: 20 RDGERDRELDRPRD--RDHRDRDRDKERDRDRDRDRERRRGER 60
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Frame = -3
Query: 444 HH--HHGFRVGTCDRRCGDPRRNMRTHTSREHDLRHDRSVRRQLES 313
HH H G+ G RR P M + R H RH + V + S
Sbjct: 137 HHPPHAGYNCGGGGRRAPSPSPQMHAASRRHHHGRHHQQVAPKARS 182
>01_07_0014 -
40455673-40455723,40455815-40455892,40455987-40456049,
40456250-40456390,40456851-40456949,40457403-40457477,
40457556-40457652,40457738-40457805,40458456-40458512,
40458613-40458671,40458798-40458921,40459208-40459264,
40459378-40459457,40459585-40459793,40459868-40459986
Length = 458
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 516 GGQLCIRPCGWNHQAGVESIRLSRHHHHGFRV 421
GGQ C + W+ +A VES+ H+ H F V
Sbjct: 321 GGQSCNK---WSVEADVESLAWDPHNEHSFMV 349
>01_05_0540 +
23069954-23070103,23070170-23070251,23070298-23070355,
23071276-23071318,23072262-23073341,23073448-23073509,
23073759-23073855,23074703-23074984,23075073-23075147,
23075223-23075276,23075373-23075515,23076567-23076858
Length = 805
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 158 CCSSTDSRSPFDSTCRSYCSRRPRGTFFVY 247
C +++D+R F R C+ P+G F VY
Sbjct: 140 CYNTSDARYEFGHPYRRCCALPPKGHFLVY 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,215,186
Number of Sequences: 37544
Number of extensions: 496828
Number of successful extensions: 1820
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1817
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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