Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1498
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t... 38 0.008
At1g21310.1 68414.m02662 proline-rich extensin-like family prote... 35 0.054
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 31 0.88
At5g29070.1 68418.m03617 expressed protein 30 1.2
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c... 30 1.2
At5g41100.2 68418.m04997 expressed protein 29 2.0
At5g41100.1 68418.m04996 expressed protein 29 2.0
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 2.0
At3g53140.1 68416.m05856 O-diphenol-O-methyl transferase, putati... 29 3.5
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 28 4.7
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 28 4.7
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 28 4.7
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 28 4.7
At5g31873.1 68418.m03777 hypothetical protein 28 6.2
At5g28120.1 68418.m03396 hypothetical protein 28 6.2
At5g28110.1 68418.m03395 hypothetical protein 28 6.2
At3g30816.1 68416.m03949 hypothetical protein 28 6.2
At5g46830.1 68418.m05769 basic helix-loop-helix (bHLH) family pr... 27 8.2
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 8.2
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 8.2
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 8.2
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 27 8.2
>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein low similarity to
glucoamylase S1/S2 [Precursor] from Saccharomyces
cerevisiae [SP|P08640], proteophosphoglycan from
Leishmania major [GI:5420387]; contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 256
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +3
Query: 99 VRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHA-APVEH-SSYIHASPVVQH 272
VRH P +H +P +SH++P + ++P + H+ P+V A +PV+ SS +SP
Sbjct: 165 VRHSSPP---VSHSSPPVSHSSPPTSRSSPAVSHSSPVVAASSPVKAVSSSTASSPRAAS 221
Query: 273 FSP 281
SP
Sbjct: 222 PSP 224
>At1g21310.1 68414.m02662 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 431
Score = 34.7 bits (76), Expect = 0.054
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Frame = +3
Query: 123 QATAHYTPVLSHAAPVLTHAAPLIQHAGP--IVHAAPV--EHSSYIHASPVVQHFS--PV 284
Q+TA+Y S P + H P ++H P + H+ P +H Y P V+H+S PV
Sbjct: 24 QSTANY--FYSSPPPPVKHYTPPVKHYSPPPVYHSPPPPKKHYEYKSPPPPVKHYSPPPV 81
Query: 285 QHAP 296
H+P
Sbjct: 82 YHSP 85
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Frame = +3
Query: 135 HYTPV-LSHAAP------VLTHAAPLIQHAGP--IVHAAPVEHSSYIHASPV--VQHFS- 278
HY+P + H+ P V P ++H P + H+ P Y++ SP V+H+S
Sbjct: 75 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 134
Query: 279 -PVQHAP 296
PV H+P
Sbjct: 135 PPVYHSP 141
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Frame = +3
Query: 135 HYTPV-LSHAAP------VLTHAAPLIQHAGP--IVHAAPVEHSSYIHASPV--VQHFS- 278
HY+P + H+ P V P ++H P + H+ P Y++ SP V+H+S
Sbjct: 103 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 162
Query: 279 -PVQHAP 296
PV H+P
Sbjct: 163 PPVYHSP 169
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Frame = +3
Query: 135 HYTPV-LSHAAP------VLTHAAPLIQHAGP--IVHAAPVEHSSYIHASPV--VQHFS- 278
HY+P + H+ P V P ++H P + H+ P Y++ SP V+H+S
Sbjct: 131 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 190
Query: 279 -PVQHAP 296
PV H+P
Sbjct: 191 PPVYHSP 197
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Frame = +3
Query: 135 HYTPV-LSHAAP------VLTHAAPLIQHAGP--IVHAAPVEHSSYIHASPV--VQHFS- 278
HY+P + H+ P V P ++H P + H+ P Y++ SP V+H+S
Sbjct: 159 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 218
Query: 279 -PVQHAP 296
PV H+P
Sbjct: 219 PPVYHSP 225
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Frame = +3
Query: 135 HYTPV-LSHAAP------VLTHAAPLIQHAGP--IVHAAPVEHSSYIHASPV--VQHFS- 278
HY+P + H+ P V P ++H P + H+ P Y++ SP V+H+S
Sbjct: 187 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 246
Query: 279 -PVQHAP 296
PV H+P
Sbjct: 247 PPVYHSP 253
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Frame = +3
Query: 135 HYTPV-LSHAAP------VLTHAAPLIQHAGP--IVHAAPVEHSSYIHASPV--VQHFS- 278
HY+P + H+ P V P ++H P + H+ P Y++ SP V+H+S
Sbjct: 215 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 274
Query: 279 -PVQHAP 296
PV H+P
Sbjct: 275 PPVYHSP 281
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Frame = +3
Query: 135 HYTPV-LSHAAP------VLTHAAPLIQHAGP--IVHAAPVEHSSYIHASPV--VQHFS- 278
HY+P + H+ P V P ++H P + H+ P Y++ SP V+H+S
Sbjct: 243 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 302
Query: 279 -PVQHAP 296
PV H+P
Sbjct: 303 PPVYHSP 309
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Frame = +3
Query: 135 HYTPV-LSHAAP------VLTHAAPLIQHAGP--IVHAAPVEHSSYIHASPV--VQHFS- 278
HY+P + H+ P V P ++H P + H+ P Y++ SP V+H+S
Sbjct: 271 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 330
Query: 279 -PVQHAP 296
PV H+P
Sbjct: 331 PPVYHSP 337
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Frame = +3
Query: 135 HYTPV-LSHAAP------VLTHAAPLIQHAGP--IVHAAPVEHSSYIHASPV--VQHFS- 278
HY+P + H+ P V P ++H P + H+ P Y++ SP V+H+S
Sbjct: 299 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 358
Query: 279 -PVQHAP 296
PV H+P
Sbjct: 359 PPVYHSP 365
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Frame = +3
Query: 135 HYTPV-LSHAAP------VLTHAAPLIQHAGP--IVHAAPVEHSSYIHASPV--VQHFS- 278
HY+P + H+ P V P ++H P + H+ P Y++ SP V+H+S
Sbjct: 327 HYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSP 386
Query: 279 -PVQHAP 296
PV H+P
Sbjct: 387 PPVYHSP 393
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Frame = +3
Query: 186 PLIQHAGP--IVHAAPVEHSSYIHASPV--VQHFS--PVQHAP 296
P ++H P + H+ P Y++ SP V+H+S PV H+P
Sbjct: 71 PPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSP 113
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 30.7 bits (66), Expect = 0.88
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +1
Query: 319 QLPSNTPIMSKIMLPRSMSSHIPSRIPTPAI-----TSPNTKPV 435
Q P+ + S++ P S S+ PS+ PTP + +PN+KPV
Sbjct: 726 QAPTTSSETSQVPTPSSESNQSPSQAPTPILEPVHAPTPNSKPV 769
>At5g29070.1 68418.m03617 expressed protein
Length = 307
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 167 STDSRSPFDST-CRSYCSRRPRGTFFVYTCFASSPTLQPCATCSSRAPR 310
+T R P D T C S RP T T SSPT +P +CS AP+
Sbjct: 93 ATLDRRPTDWTRCGSDTQPRPWATQGATTGPESSPTCRPTGSCSVAAPQ 141
>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
contains Pfam PF01422: NF-X1 type zinc finger; similar
to transcriptional repressor NF-X1 (SP:Q12986) [Homo
sapiens]; similar to EST gb|T21002
Length = 1188
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/52 (40%), Positives = 25/52 (48%)
Frame = -3
Query: 522 RCGGQLCIRPCGWNHQAGVESIRLSRHHHHGFRVGTCDRRCGDPRRNMRTHT 367
RCG C R C H +S S G RV TC ++CG PR + R HT
Sbjct: 720 RCGMHACARTC---HPEPCDSFNESEA---GMRV-TCRQKCGAPRTDCR-HT 763
>At5g41100.2 68418.m04997 expressed protein
Length = 582
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Frame = +3
Query: 99 VRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEHSSYIHASPVVQHFS 278
+R PS A TPV S ++P+ T H+ + H++P+E H +S
Sbjct: 346 MRQMTPSANAYILPTPVDSKSSPIFTKPVTQTNHSANLWHSSPLEPIKTAHKDAESNLYS 405
Query: 279 ----PVQHA------PVVHHAAIPIAVE 332
P +HA P +P+AV+
Sbjct: 406 RLPRPSEHAFSGPLKPSSTRLPVPVAVQ 433
>At5g41100.1 68418.m04996 expressed protein
Length = 586
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Frame = +3
Query: 99 VRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAPVEHSSYIHASPVVQHFS 278
+R PS A TPV S ++P+ T H+ + H++P+E H +S
Sbjct: 346 MRQMTPSANAYILPTPVDSKSSPIFTKPVTQTNHSANLWHSSPLEPIKTAHKDAESNLYS 405
Query: 279 ----PVQHA------PVVHHAAIPIAVE 332
P +HA P +P+AV+
Sbjct: 406 RLPRPSEHAFSGPLKPSSTRLPVPVAVQ 433
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +3
Query: 174 THAAPLIQHAGPIVHAAPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIP 320
T P H+ P +P Y ++SP H SP H+P H+ P
Sbjct: 535 TRPPPPPPHSPPPPQFSPPPPEPYYYSSPPPPHSSPPPHSPPPPHSPPP 583
>At3g53140.1 68416.m05856 O-diphenol-O-methyl transferase, putative
similar to GI:6688808 [Medicago sativa subsp. x varia],
caffeic acid O-methyltransferase (homt1), Populus
kitakamiensis, EMBL:PKHOMT1A
Length = 359
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 150 LSHAAPVLTHAAPLIQHAGPIVHAAPVE 233
LS+AA VL H + A P+VH A VE
Sbjct: 115 LSYAAYVLQHHQEALMRAWPLVHTAVVE 142
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 334 TPIMSKIMLPRSMSSHIPSRIPTPAITSPNTKPVMVMS*KANTLYSSLMVPS 489
+PI S P + S+ S +PA+TSP T P + A++ S P+
Sbjct: 23 SPISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVESPKSPA 74
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Frame = +3
Query: 114 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPIVHAAP-VEHSSYIHASPVVQHFSPVQH 290
P+ + PV S A H + + P ++ P +HSSY H S
Sbjct: 61 PNPNPPQYTRPVTSPATQQQQHLSQPLVRPPPQAYSRPWQQHSSYTHFSSASSPLLSSSS 120
Query: 291 APVVHHAAIPIAVEHSDHVEDHAPA 365
AP +++PI+ + + PA
Sbjct: 121 APASSSSSLPISGQQRGGMAIGVPA 145
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Frame = +3
Query: 135 HYTP--VLSHAAPVLTHAAPLIQHAGPIVHAAPVEHSS----YIHASPVVQHFSPVQHAP 296
HY+P V P + H +P + P PV+H S Y P V+H+SP
Sbjct: 108 HYSPPPVYKSPPPPVKHYSPPPVYKSP---PPPVKHYSPPPVYKSPPPPVKHYSPPPSYT 164
Query: 297 VVHH 308
+HH
Sbjct: 165 TLHH 168
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Frame = +3
Query: 135 HYTP--VLSHAAPVLTHAAPLIQHAGPIVHAAPVEHSS----YIHASPVVQHFSPVQHAP 296
HY+P V P + H +P + P PV+H S Y P V+H+SP
Sbjct: 108 HYSPPPVYKSPPPPVKHYSPPPVYKSP---PPPVKHYSPPPVYKSPPPPVKHYSPPPSYT 164
Query: 297 VVHH 308
+HH
Sbjct: 165 TLHH 168
>At5g31873.1 68418.m03777 hypothetical protein
Length = 271
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 408 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 277
+R DPR N+R R H L +D V + G+ + HVA G
Sbjct: 196 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 238
>At5g28120.1 68418.m03396 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 408 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 277
+R DPR N+R R H L +D V + G+ + HVA G
Sbjct: 394 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 436
>At5g28110.1 68418.m03395 hypothetical protein
Length = 493
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 408 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 277
+R DPR N+R R H L +D V + G+ + HVA G
Sbjct: 394 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 436
>At3g30816.1 68416.m03949 hypothetical protein
Length = 342
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 408 RRCGDPRRNMRTHTSREHDLRHDRSVRRQLESQRGARLEHVAQG 277
+R DPR N+R R H L +D V + G+ + HVA G
Sbjct: 231 KRMLDPRANLRPTEERFHGLAYDDPVDESTDPW-GSIVHHVAGG 273
>At5g46830.1 68418.m05769 basic helix-loop-helix (bHLH) family
protein
Length = 511
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 420 QHETRDGDVVKGEYSLLQPDGSIRKVEYTADHHNG 524
++E + +++K E +++ D ++ +VE DHH G
Sbjct: 424 KYEEKASEMMKIEVKIMESDDAMVRVESRKDHHPG 458
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -3
Query: 456 RLSRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRH-DRSVRRQLESQ 310
R SRH H G R G + R R+HD R DR RR S+
Sbjct: 99 RSSRHRDHSRERGERRERGGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSR 148
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -3
Query: 456 RLSRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRH-DRSVRRQLESQ 310
R SRH H G R G + R R+HD R DR RR S+
Sbjct: 99 RSSRHRDHSRERGERRERGGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSR 148
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -3
Query: 456 RLSRHHHHGFRVGTCDRRCGDPRRNMRTHTSREHDLRH-DRSVRRQLESQ 310
R SRH H G R G + R R+HD R DR RR S+
Sbjct: 99 RSSRHRDHSRERGERRERGGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSR 148
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 517 WWSAVYSTLRMEPSGWSREYSPFTTSP 437
+++ +T M PS W++ YSP+ SP
Sbjct: 88 YYTDTTNTPSMSPSPWNQTYSPYYKSP 114
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,328,580
Number of Sequences: 28952
Number of extensions: 359136
Number of successful extensions: 1365
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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