Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1497
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...   135   5e-33
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    35   0.012
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.80 
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    28   1.4  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    27   3.2  
SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|c...    26   4.3  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    26   4.3  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    26   4.3  
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    26   4.3  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    26   5.6  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   5.6  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    26   5.6  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   7.5  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    25   9.9  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   9.9  

>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score =  135 bits (327), Expect = 5e-33
 Identities = 63/142 (44%), Positives = 93/142 (65%), Gaps = 4/142 (2%)
 Frame = -2

Query: 598 LCMSWLVDHVYAIREAATLNLKKLVEQYGPQWAENNVIPKVLNMSHEQNYLHRMTYLFCI 419
           LCMSWL DHVY+IREAA  NL+KL E +G +WA   +IPK L M    NYL+RMT +F I
Sbjct: 444 LCMSWLEDHVYSIREAAIKNLRKLTEIFGLEWATETIIPKFLAMRSHPNYLYRMTTIFAI 503

Query: 418 NVLSEVCGKDITTRVLLPTVLSMADDNVANVRFNVAKTLQIMAKYL----DPAVIQPQVK 251
           + ++     ++  + +LPT+  + +D + N+RFNVAK  +++   L    D  V + Q+ 
Sbjct: 504 SEIAPALNAEVIEKQILPTLEQLVNDPIPNIRFNVAKAFEVLKPVLAAGGDSTVYEQQII 563

Query: 250 PVLEKLNVDPDVDVKYFASEAI 185
           P+LE+L  D D DV+YFA++A+
Sbjct: 564 PLLEQLTKDNDPDVQYFATQAL 585



 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 23/99 (23%), Positives = 52/99 (52%)
 Frame = -2

Query: 577 DHVYAIREAATLNLKKLVEQYGPQWAENNVIPKVLNMSHEQNYLHRMTYLFCINVLSEVC 398
           D    +R A  +N+  L  Q G +     ++P  L +  ++N   R+  +  + V+++V 
Sbjct: 334 DPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFLELLKDENPEVRLNIISKLEVVNKVV 393

Query: 397 GKDITTRVLLPTVLSMADDNVANVRFNVAKTLQIMAKYL 281
           G ++ ++ LLP ++++A+D    VR  +   + ++A+ L
Sbjct: 394 GIELLSQSLLPAIVTLAEDKQWRVRLAIIDYIPLLAQQL 432



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 31/142 (21%), Positives = 56/142 (39%)
 Frame = -2

Query: 649 LAGTAGPGVLRREA*PALCMSWLVDHVYAIREAATLNLKKLVEQYGPQWAENNVIPKVLN 470
           LA   GP +++ E      +  + D    +R A    +    E    +     +IP +  
Sbjct: 272 LAKVVGPSLIKDELIKPFVLL-MKDTEQEVRRAIATQIPGFCELLDKRIVLEEIIPVIQE 330

Query: 469 MSHEQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTVLSMADDNVANVRFNVAKTLQIMA 290
           + ++     R      I  L+   GK+ TT  LLP  L +  D    VR N+   L+++ 
Sbjct: 331 LINDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFLELLKDENPEVRLNIISKLEVVN 390

Query: 289 KYLDPAVIQPQVKPVLEKLNVD 224
           K +   ++   + P +  L  D
Sbjct: 391 KVVGIELLSQSLLPAIVTLAED 412



 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 639 QLGQEFFDEKLDQLC 595
           QLG EFF+EK+  LC
Sbjct: 431 QLGVEFFNEKMGNLC 445


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
 Frame = -2

Query: 490 VIPKVLNMSHEQNYLHRMTYLFCINVLSEVCGKDITTRV--LLPTVLSMADDNVANVRFN 317
           +IP+ + ++  +N   R   LFC+N    +  + +   +   L T  ++A D   NVR N
Sbjct: 179 MIPRFIELARHENPKIRTDALFCLNQFVLIQSQSLYAHIDTFLETCYALATDVSPNVRKN 238

Query: 316 VAKTLQIMAKYLDPAVIQPQVKPVLEKL---NVDPDVDVKYFASEAIAGIA 173
           V + L  +   + P  I P +  ++E +     D D +V   A E    IA
Sbjct: 239 VCQALVYLLD-VRPDKIAPSLGSIVEYMLYSTQDSDQNVALEACEFWLAIA 288


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +3

Query: 279 SKYLAIICSVL-ATLNRTLATLSSAIDNTVGSSTLVVMSLPHTSDSTLMQNKYVI 440
           S Y A + ++  ++L+ T  + SSAI  +V SSTL+  S  +T  S++  +  ++
Sbjct: 707 STYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASSSNTLLSSITSSSAIV 761


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 514 GPQWAENNVIPKVLNMSHEQNYLHRMTYLFCINVLSEVCGK 392
           GPQ  ++NV+P+V+  S E  Y +       +  LSE  GK
Sbjct: 456 GPQVHQSNVLPRVIQQSSE--YANTQLQYISLTELSERFGK 494


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 23/72 (31%), Positives = 31/72 (43%)
 Frame = -2

Query: 493 NVIPKVLNMSHEQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTVLSMADDNVANVRFNV 314
           N++  V+N        HR T L C+N +       I +R L    LS    N ANVRF V
Sbjct: 358 NMLKLVVNSEENAVQRHRSTILACLNDVD----SSIQSRAL---ELSTFLVNEANVRFMV 410

Query: 313 AKTLQIMAKYLD 278
            + L  +    D
Sbjct: 411 RELLSFLDNVSD 422


>SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 641 DSWARSSSTRSLTSFVHVVAGGPRVRHPRGC 549
           D W   S TRS+  FV   +G    +  RGC
Sbjct: 36  DKWNAKSWTRSIPLFVKFASGKGHDKQLRGC 66


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -2

Query: 583 LVDHVYAIREAATLNLKKLVEQYGPQWAENNVIPKVL 473
           L+  VY IRE   L  K+  ++YG  + EN+V P+VL
Sbjct: 120 LLPAVYEIREKDVLYKKEDADKYGFIFNENSV-PRVL 155


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +3

Query: 492 LFSAHCGPYCSTSFFRLR-VAASRMAYTW 575
           LFS  C  YC   FF+LR    SR  + W
Sbjct: 203 LFSMVCAIYCYVRFFKLRHTPFSRPWWAW 231


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 386 DVLAAH-FGQHVNAEQVRHPVQVVLLVRHVQYFGYDVVLC 502
           DVL  H +  HV+AE+V   +  V+    V+Y G   + C
Sbjct: 151 DVLQIHRYDPHVSAEEVMRALNDVVESGKVRYIGASTMRC 190


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 144 ILHKGPNIRTVLWSIIDSW 88
           I+HK P +   +WSII SW
Sbjct: 273 IVHKAPWLFQGVWSIIKSW 291


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 342 SSAIDNTVGSSTLVVMSLPHTSDSTLMQNKY 434
           SS+ DN   S+TL + +  H S+    Q++Y
Sbjct: 33  SSSFDNEAASTTLGISTAIHASNRPFRQDEY 63


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -3

Query: 411 CPKCAARTSRPGCCCRPCCLWPTTMLPTCGSML 313
           CP C     R   CC   CL  T     CG+ L
Sbjct: 368 CPTCDRVVERIDGCCHMNCLCGTHFCFLCGAYL 400


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 144 ILHKGPNIRTVLWSIIDSW 88
           ILHK P I   +W+II  W
Sbjct: 240 ILHKSPWIFRSVWNIIKGW 258


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 250 PVLEKLNVDPDVDVKYFASEAIAGIA 173
           PVL  L    D DV+Y+ + +I+ IA
Sbjct: 211 PVLVSLLPSSDTDVQYYCTTSISNIA 236


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 144 ILHKGPNIRTVLWSIIDSW 88
           ++H    + TV+W  I SW
Sbjct: 608 LMHNSHTVHTVVWKTISSW 626


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,297,066
Number of Sequences: 5004
Number of extensions: 39542
Number of successful extensions: 133
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)