Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1497
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,370... 153 2e-37
11_06_0182 + 20997071-20997832,20998010-20998150 33 0.21
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 31 0.83
07_01_0802 - 6287180-6287605 31 1.1
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 31 1.1
07_01_0806 - 6308383-6308856 29 4.4
05_04_0190 - 18922555-18923349 29 4.4
03_05_1062 - 30043596-30043811,30044083-30044178,30044387-300444... 28 5.9
03_06_0566 + 34760991-34761186,34761283-34761455,34762370-347624... 28 7.7
>09_02_0058 -
3704138-3704257,3704355-3704421,3704502-3704641,
3705332-3705424,3705927-3706109,3706491-3706595,
3706738-3706818,3706905-3707046,3707207-3707286,
3707456-3707568,3708051-3708297,3708659-3709051
Length = 587
Score = 153 bits (370), Expect = 2e-37
Identities = 68/139 (48%), Positives = 102/139 (73%)
Frame = -2
Query: 601 ALCMSWLVDHVYAIREAATLNLKKLVEQYGPQWAENNVIPKVLNMSHEQNYLHRMTYLFC 422
ALCM WL D V++IR+AA NLK+L E++GP+WA ++IP+VL + +YL+RMT L
Sbjct: 439 ALCMQWLEDKVFSIRDAAANNLKRLAEEFGPEWAMQHIIPQVLEKINNPHYLYRMTILQA 498
Query: 421 INVLSEVCGKDITTRVLLPTVLSMADDNVANVRFNVAKTLQIMAKYLDPAVIQPQVKPVL 242
I++L+ V G +IT + LLP V++ + D V N++FNVAK LQ + LD +V++ VKP L
Sbjct: 499 ISLLAPVMGAEITCQQLLPVVINSSKDRVPNIKFNVAKVLQALIPILDQSVVEKNVKPCL 558
Query: 241 EKLNVDPDVDVKYFASEAI 185
+L+ DPDVDV+Y+A++A+
Sbjct: 559 VELSEDPDVDVRYYANQAL 577
Score = 52.0 bits (119), Expect = 4e-07
Identities = 38/147 (25%), Positives = 65/147 (44%)
Frame = -2
Query: 664 HQCFYLAGTAGPGVLRREA*PALCMSWLVDHVYAIREAATLNLKKLVEQYGPQWAENNVI 485
+Q + L GP R + PA + L D+ +R AA + K PQ A +++
Sbjct: 263 NQLYELCEAVGPEHSREQLVPAY-VRLLRDNEAEVRIAAAGKVTKFCRILSPQLAIQHIL 321
Query: 484 PKVLNMSHEQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTVLSMADDNVANVRFNVAKT 305
P V +S + + R I ++ V GK+ T LLP LS+ D +VR N+
Sbjct: 322 PCVKELSSDSSQHVRSALASVIMGMAPVLGKEATIEQLLPIFLSLLKDEFPDVRLNIISK 381
Query: 304 LQIMAKYLDPAVIQPQVKPVLEKLNVD 224
L + + + ++ + P + +L D
Sbjct: 382 LDQVNQVIGIDLLSQSLLPAIVELAED 408
Score = 44.8 bits (101), Expect = 6e-05
Identities = 30/122 (24%), Positives = 57/122 (46%)
Frame = -2
Query: 538 LKKLVEQYGPQWAENNVIPKVLNMSHEQNYLHRMTYLFCINVLSEVCGKDITTRVLLPTV 359
L KL+E PQ +++P ++N S ++++ R + L E G + + L+P
Sbjct: 229 LGKLLE---PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEHSREQLVPAY 285
Query: 358 LSMADDNVANVRFNVAKTLQIMAKYLDPAVIQPQVKPVLEKLNVDPDVDVKYFASEAIAG 179
+ + DN A VR A + + L P + + P +++L+ D V+ + I G
Sbjct: 286 VRLLRDNEAEVRIAAAGKVTKFCRILSPQLAIQHILPCVKELSSDSSQHVRSALASVIMG 345
Query: 178 IA 173
+A
Sbjct: 346 MA 347
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/94 (19%), Positives = 47/94 (50%)
Frame = -2
Query: 562 IREAATLNLKKLVEQYGPQWAENNVIPKVLNMSHEQNYLHRMTYLFCINVLSEVCGKDIT 383
+R A + + G + ++P L++ ++ R+ + ++ +++V G D+
Sbjct: 335 VRSALASVIMGMAPVLGKEATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394
Query: 382 TRVLLPTVLSMADDNVANVRFNVAKTLQIMAKYL 281
++ LLP ++ +A+D VR + + + ++A L
Sbjct: 395 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428
>11_06_0182 + 20997071-20997832,20998010-20998150
Length = 300
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +3
Query: 399 HTSDSTLMQNKYVILCK*FCSCDMFSTLGMTLFSAHCGPYCSTSFFR 539
HT + T+ + ++ K F SCD G T+ H PYC SF R
Sbjct: 94 HTGEVTVSDSSSILYYKAFVSCDPSMGGGYTVVLIH-NPYCQLSFAR 139
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 31.1 bits (67), Expect = 0.83
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Frame = -2
Query: 583 LVDHVYAIREAATLNLKKLVEQYGPQWAENNVIPKVLNMSHEQNY-------LHRMTYLF 425
L D +RE+A L L + G Q A + ++P +L + L ++ F
Sbjct: 1934 LCDSTQEVRESAGLAFSTLYKSAGLQ-AIDEIVPTLLRALEDDETSATALDGLKQILSSF 1992
Query: 424 ---CINVLSEVCGKDITTRV--LLPTVLSMADDNVANVRFNVAKTLQIMAKYLDPAVIQP 260
+ L+EV G + + + +LP ++ DD A+V+ + K + + +D I+
Sbjct: 1993 NAHALGALAEVAGPGLNSHIGTVLPALILAMDDEDADVQNSARKAAETVVLVIDEEGIET 2052
Query: 259 QVKPVLEKLN 230
+ +L+ +N
Sbjct: 2053 LIPELLKGVN 2062
>07_01_0802 - 6287180-6287605
Length = 141
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 381 PGCCCRPCCLWPTTMLPTCGSMLPRRC 301
PG CRP +PT LP C +++ R+C
Sbjct: 13 PGEQCRPGISYPTYSLPQCRTLVRRQC 39
>02_03_0220 + 16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 30.7 bits (66), Expect = 1.1
Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Frame = -2
Query: 592 MSWLVDHVYAIREAATLNLKKLVEQYGPQWAENNVIPKVLNMSHEQNYLHRMTYLFCINV 413
+ L H IR A + + GP+ +V+ +LN Q +R+ I +
Sbjct: 1087 LEMLKAHKKGIRRATANTFGYIAKAIGPE----DVLATLLNNLKVQERQNRVCTTVAIAI 1142
Query: 412 LSEVCGKDITTRVLLPTVLSMADDNVANVRFNVAKTLQIMAKYLDPAVIQ--PQVKPVLE 239
++E C + +LP +++ NVR + K+L + +Y+ V P+LE
Sbjct: 1143 VAETC----SPFTVLPALMNEYRVPEFNVRNGILKSLSFLFEYIGEMGKDYIYAVTPLLE 1198
Query: 238 KLNVDPDVDVKYFASEAIAGIA 173
+D D+ + A+ A+ +A
Sbjct: 1199 DALMDRDLVHRQTAASAVKHMA 1220
>07_01_0806 - 6308383-6308856
Length = 157
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 381 PGCCCRPCCLWPTTMLPTCGSMLPRRC 301
PG C+P +PT LP C + + R+C
Sbjct: 37 PGQLCQPGIGYPTYPLPRCRAFVKRQC 63
>05_04_0190 - 18922555-18923349
Length = 264
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 668 RPPMLLPGGDSWARSSSTRSLTSFVHVVAGGPRVRHP 558
R P+LL G + R+ R L + V PR RHP
Sbjct: 18 RAPLLLHCGHGFCRACLARMLANAAGAVLACPRCRHP 54
>03_05_1062 -
30043596-30043811,30044083-30044178,30044387-30044448,
30044990-30045023,30045220-30046173
Length = 453
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 358 LSMADDNVANVRFNVAKTLQIMAKYLDPAVIQPQVKPVLEKLNVDPDV 215
LS D + F A Q+ DP ++Q +PV ++VD DV
Sbjct: 287 LSATDAALLGNFFGAAAVSQVGVPTFDPKMLQVFTEPVYSNMHVDDDV 334
>03_06_0566 +
34760991-34761186,34761283-34761455,34762370-34762416,
34762546-34762640,34762734-34762816,34763331-34763399,
34763874-34764059,34764374-34764508,34764774-34764908,
34765148-34765218,34765393-34765470,34765626-34765767,
34765940-34766050
Length = 506
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 434 RHPVQVVLLVRHVQYFGYDVVLCPLRPVLLHQLLQVEGRSL 556
R P +V L+ H+ Y GY V+ +R ++ + + EG+ +
Sbjct: 63 RSPGRVNLIGEHIDYEGYSVLPMAIRQDMIVAIRRAEGKEV 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,980,461
Number of Sequences: 37544
Number of extensions: 293207
Number of successful extensions: 934
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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