Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1494
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb...    27   1.6  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    27   2.1  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    27   2.1  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   4.9  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   6.4  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   6.4  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   8.5  
SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49 |...    25   8.5  

>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 361 LWPEGKMKDSDNKNRVKECNWSYENEVNVSDEKLREE 471
           LWPE +  D +N+   +E   +   E+N   +K ++E
Sbjct: 66  LWPETQSSDQENEEEGEELEDAVAKEINSLQKKNKKE 102


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +1

Query: 352 AQELWPEGKMKD--SDNKNRVKECNWSYENEVN--VSDEKLREENT 477
           ++++  E  MKD  ++   R+KE   SYENEVN  ++   L+E  T
Sbjct: 512 SKQVEEESSMKDDLTEMNQRLKEQIESYENEVNSEITSRTLKEFET 557


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -2

Query: 405 AILVVRILHLTLRPQLLRR 349
           ++LV+R LH  LRP LLRR
Sbjct: 626 SLLVIRRLHKVLRPFLLRR 644


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 468  GKHRQWNHKSFDATPKAIRPLMKRTTDIKPALLNIDPDSASSPK 599
            G H   NHK    + + + P       ++P++LN++P S   P+
Sbjct: 927  GIHDSRNHKFLPISHR-VSPKQFLELSVRPSILNMEPFSMKEPQ 969


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 17/62 (27%), Positives = 25/62 (40%)
 Frame = +1

Query: 217 MSTGGSGAVFFLGTRAHYQVLQRPENRFDLENGNESTESIYQNRSAQELWPEGKMKDSDN 396
           ++  G+G +      AH  +      R D EN NE       N S+++  P GK   S  
Sbjct: 152 VTVSGTGELIGPTRNAHSNLTPTVIQRIDFENVNEK-----NNSSSEDTQPNGKRPSSLQ 206

Query: 397 KN 402
            N
Sbjct: 207 SN 208


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +1

Query: 298 FDLENGNESTESIYQNRSAQELWPEGKMKDSD---NKNRVKECNWSYENEVNVSDEKLR 465
           FD  + + +   I Q  +A E  P  KM  S+   ++NR ++  W  +NE    D  LR
Sbjct: 131 FDPNDPSAAAFYIAQQVAAIEHPPPRKMTSSEKTRSENRERKKRWREQNEERNKDNDLR 189


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 203  DN*DKCLQEAVELYFSSELELIIRSSNGPKIDSIWRTAT 319
            D+  K  QE    Y+S  L  ++RS     IDS+ +  T
Sbjct: 2224 DDLSKRTQELKSTYYSERLSKLLRSDRKGMIDSLAQVLT 2262


>SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
 Frame = -1

Query: 376 YPQATALAPND-------SDRWTPLIRCRSPNRIDFRAV 281
           YP    +APN         D W PL++   PN   F++V
Sbjct: 37  YPLQKPVAPNGMRPAKLRKDHWVPLLKVEFPNESMFQSV 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,004
Number of Sequences: 5004
Number of extensions: 45778
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)