Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1494
(604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0766 - 27923120-27923554,27923843-27924580,27924815-279248... 29 2.8
10_08_0251 - 16188603-16188944 29 3.7
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701... 29 3.7
02_05_0681 + 30842038-30842301,30843067-30843300,30843409-308435... 29 3.7
11_06_0410 - 23223701-23223714,23223863-23225159,23225314-232262... 28 5.0
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 28 6.5
07_03_1126 - 24166758-24166879,24166948-24167386,24167708-241678... 28 6.5
01_06_1572 + 38319544-38319849,38320427-38320513,38320584-383206... 28 6.5
09_04_0634 - 19132916-19134033,19134716-19135915,19136002-191361... 27 8.7
>04_04_0766 -
27923120-27923554,27923843-27924580,27924815-27924874,
27925281-27925328
Length = 426
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 400 SCCPNPSSYPQATALAPNDSDRWTPLIRCRSPNRIDFRAVGG 275
SC P+PSS+ A +D + PLI P ++ +AV G
Sbjct: 189 SCRPSPSSFVAWKRTADSDEVQAVPLISGEPPQKLLKKAVAG 230
>10_08_0251 - 16188603-16188944
Length = 113
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -1
Query: 337 RWTPLIRCRSPN-RIDFRAVGGPDNEL*FRGK 245
RW PL RCR P R R G P E RG+
Sbjct: 76 RWVPLERCRRPRLRTPARGWGRPSGEPTTRGR 107
>04_04_1462 -
33769122-33769151,33769385-33769426,33769571-33770158,
33770398-33770508,33770585-33770625,33771238-33771382,
33771578-33771781,33772626-33772769,33772991-33773183,
33774559-33774602,33774694-33774822,33774907-33774954,
33775058-33775120,33775198-33775236,33776694-33776767,
33777460-33777518,33777709-33777768,33777920-33778044,
33778693-33778751,33779418-33779511,33779572-33779625,
33779775-33779813,33780423-33780602
Length = 854
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = +1
Query: 325 TESIYQNRSAQELW----PEGKMKDSDNKNRVKECNWSYEN 435
TE + R+ ++LW P G + +N +++KE NW++EN
Sbjct: 51 TEYFPEKRNLEDLWLSAFPVGT--EWENIDKIKEFNWNFEN 89
>02_05_0681 +
30842038-30842301,30843067-30843300,30843409-30843578,
30844130-30844474,30844475-30844661,30844747-30844798,
30844843-30845108,30845302-30845400,30845577-30846292,
30846616-30847098,30847288-30847546
Length = 1024
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 310 NGNESTESIYQNRSAQELWPEGKMKDSDNKNRVKE--CNWSYENEVNVSDEKLREENTGN 483
NG +T S +Q + W K+ SD + + E C+ SY+N+ + + E+TG
Sbjct: 580 NGAFNTLSGFQAADERNNWDYFKLLLSDKEPHMDELECDRSYQNDCDCVTLMISIEDTGV 639
Query: 484 GI 489
GI
Sbjct: 640 GI 641
>11_06_0410 -
23223701-23223714,23223863-23225159,23225314-23226225,
23226952-23227023,23227323-23227471,23227879-23227912
Length = 825
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 340 QNRSAQELWPEGKMKDSDNKN 402
+N++A+ +W EGKM DS KN
Sbjct: 505 RNQNARMVWSEGKMNDSMAKN 525
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 513 SASHRTTYDSIACVFLS*FLIGHVNFVLVAPI 418
++SH T Y VF + F+ +++F+ VAPI
Sbjct: 257 NSSHGTFYSGSVSVFATGFVAKNISFINVAPI 288
>07_03_1126 -
24166758-24166879,24166948-24167386,24167708-24167875,
24168388-24168675,24169468-24169575,24169759-24169811,
24170033-24170192,24170353-24170442,24170902-24170953,
24171156-24171283
Length = 535
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/79 (22%), Positives = 33/79 (41%)
Frame = +1
Query: 241 VFFLGTRAHYQVLQRPENRFDLENGNESTESIYQNRSAQELWPEGKMKDSDNKNRVKECN 420
+FF + L+RP + F L G+ + + + Q EG K++ + KE +
Sbjct: 270 IFFHIAIIGHLCLKRPRDVFQLTKGSPKQKDLLHRKKKQREGNEGGDKENKDAEANKEED 329
Query: 421 WSYENEVNVSDEKLREENT 477
E E K+++ T
Sbjct: 330 DEEEGEEEEEKAKVKKSKT 348
>01_06_1572 +
38319544-38319849,38320427-38320513,38320584-38320676,
38321491-38321567,38321974-38322562,38322701-38322794,
38322884-38322996,38323438-38323524,38323842-38323964,
38324058-38324192,38324437-38324484,38324993-38325094,
38325321-38325716
Length = 749
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +1
Query: 358 ELWPEGKMKD---SDNKNRVKECNWSYENEVNVSDEK 459
ELWPEG M + D NR KE S N+ V +E+
Sbjct: 587 ELWPEGSMDNVGIKDAINRSKERRRSLYNQQKVRNEE 623
>09_04_0634 -
19132916-19134033,19134716-19135915,19136002-19136106,
19136273-19136315,19137622-19137740,19138074-19138172,
19138264-19138480
Length = 966
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 313 GNESTESIYQNRSAQELWPEGKMKDSDNKNRVKECNWSYENEVNVSDEKLREEN--TGNG 486
G+ + ES+ +N + E ++K ++ N + +C+ Y+ + D +L EN GN
Sbjct: 369 GSANAESVTENSRIDFVQTEDQLKLTNAVNTLTDCSSQYKCVKDTLDAQLPVENPFLGNS 428
Query: 487 IIS 495
+ S
Sbjct: 429 VCS 431
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,100,211
Number of Sequences: 37544
Number of extensions: 289096
Number of successful extensions: 765
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -