Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1494
         (604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4)                  29   2.9  
SB_35684| Best HMM Match : HELP (HMM E-Value=0.17)                     28   5.1  
SB_25725| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  

>SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4)
          Length = 323

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 292 NRFDLENGNESTESIYQNRSAQELWPEGKMKDSDNKNRVKECNWSYENEVNVSDEKLREE 471
           N  D  NG++ +    ++  + E     +  +SD  N   E N S  +E N SDE   E 
Sbjct: 165 NESDESNGSDESNGSDESNESDESNESDESNESDESNESDESNGS--DESNESDES-NES 221

Query: 472 NTGNG 486
           +  NG
Sbjct: 222 DESNG 226


>SB_35684| Best HMM Match : HELP (HMM E-Value=0.17)
          Length = 409

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 316 NESTESIYQNRSAQELWPE--GKMKDSDNKNRVKECNWSYENEVNVSDEKLREENTGNGI 489
           N+    I + R   E W    G   D D+++   + N S  +++N+S    R  + GNG 
Sbjct: 32  NQDKAEIEEARQKGEHWRNRGGLSSDEDSEHDYDKYNTSVNSQLNLSGSLNRSASQGNGW 91

Query: 490 I 492
           I
Sbjct: 92  I 92


>SB_25725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 480 QWNHKSFDATPKAIRPLMKRTTDIKPALLN-IDPDSASSPK 599
           +WN K FD T  +I+  +    D+ P   N ++PD   S K
Sbjct: 117 KWNEKDFDFTQSSIQ--LSAELDVSPFFTNKVEPDPRDSNK 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,690,658
Number of Sequences: 59808
Number of extensions: 342977
Number of successful extensions: 927
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)