Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1494
         (604 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051834-1|AAK93258.1|  430|Drosophila melanogaster LD33778p pro...    29   6.4  
AE014297-2415|AAF55474.2|  430|Drosophila melanogaster CG7357-PA...    29   6.4  
AY071301-1|AAL48923.1|  783|Drosophila melanogaster RE32990p pro...    28   8.5  
AF197059-1|AAF62399.1|  783|Drosophila melanogaster retinoblasto...    28   8.5  
AF195899-1|AAF66827.1|  782|Drosophila melanogaster RB-related p...    28   8.5  
AE014298-1695|AAF48098.2| 1168|Drosophila melanogaster CG32662-P...    28   8.5  
AE014297-2127|AAF55258.1|  783|Drosophila melanogaster CG5083-PA...    28   8.5  

>AY051834-1|AAK93258.1|  430|Drosophila melanogaster LD33778p
           protein.
          Length = 430

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 346 RSAQELWPEGKMKDSDNKNRVKECNWSYENEVNVSDEKLR 465
           R  ++  P+ K+  S  +    +C WS+ +  N+ D KLR
Sbjct: 189 RKPRKRRPKPKVDRSIKRYVCDQCGWSFNDHSNMKDHKLR 228


>AE014297-2415|AAF55474.2|  430|Drosophila melanogaster CG7357-PA
           protein.
          Length = 430

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 346 RSAQELWPEGKMKDSDNKNRVKECNWSYENEVNVSDEKLR 465
           R  ++  P+ K+  S  +    +C WS+ +  N+ D KLR
Sbjct: 189 RKPRKRRPKPKVDRSIKRYVCDQCGWSFNDHSNMKDHKLR 228


>AY071301-1|AAL48923.1|  783|Drosophila melanogaster RE32990p
           protein.
          Length = 783

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = +1

Query: 262 AHYQVLQRPENRFDLENGNESTESIYQ----NRSAQELWPEGKMKDSDNKNRVKECNWSY 429
           A Y  LQR + R   E+ NE+ +S+ +    N S   L    KM  S    R++  NW  
Sbjct: 61  AVYSELQRSKMRDIRESINEANDSVAKNCCWNVSLTRLLRSFKMNVSQFLRRMEHWNWLT 120

Query: 430 ENEVNVSDEKLREENTGNGIIS 495
           +NE N    ++ E     GI S
Sbjct: 121 QNE-NTFQLEVEELRCRLGITS 141


>AF197059-1|AAF62399.1|  783|Drosophila melanogaster retinoblastoma
           protein homologRBF2 protein.
          Length = 783

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = +1

Query: 262 AHYQVLQRPENRFDLENGNESTESIYQ----NRSAQELWPEGKMKDSDNKNRVKECNWSY 429
           A Y  LQR + R   E+ NE+ +S+ +    N S   L    KM  S    R++  NW  
Sbjct: 61  AVYSELQRSKMRDIRESINEANDSVAKNCCWNVSLTRLLRSFKMNVSQFLRRMEHWNWLT 120

Query: 430 ENEVNVSDEKLREENTGNGIIS 495
           +NE N    ++ E     GI S
Sbjct: 121 QNE-NTFQLEVEELRCRLGITS 141


>AF195899-1|AAF66827.1|  782|Drosophila melanogaster RB-related
           protein RBF2 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = +1

Query: 262 AHYQVLQRPENRFDLENGNESTESIYQ----NRSAQELWPEGKMKDSDNKNRVKECNWSY 429
           A Y  LQR + R   E+ NE+ +S+ +    N S   L    KM  S    R++  NW  
Sbjct: 61  AVYSELQRSKMRDIRESINEANDSVAKNCCWNVSLTRLLRSFKMNVSQFLRRMEHWNWLT 120

Query: 430 ENEVNVSDEKLREENTGNGIIS 495
           +NE N    ++ E     GI S
Sbjct: 121 QNE-NTFQLEVEELRCRLGITS 141


>AE014298-1695|AAF48098.2| 1168|Drosophila melanogaster CG32662-PA
           protein.
          Length = 1168

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 307 ENGNESTESIYQNRSAQELWPEGKMKDSDNKNRVKECNWSYENEVNVSDEKLREE 471
           E   +  E   + +  +E   E K+K+ + + R+KE     + +    +EKLREE
Sbjct: 513 EREEKLKEEKIKEKQREEKLKEEKLKEKEREERMKEKEREEKAKEKQREEKLREE 567


>AE014297-2127|AAF55258.1|  783|Drosophila melanogaster CG5083-PA
           protein.
          Length = 783

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = +1

Query: 262 AHYQVLQRPENRFDLENGNESTESIYQ----NRSAQELWPEGKMKDSDNKNRVKECNWSY 429
           A Y  LQR + R   E+ NE+ +S+ +    N S   L    KM  S    R++  NW  
Sbjct: 61  AVYSELQRSKMRDIRESINEANDSVAKNCCWNVSLTRLLRSFKMNVSQFLRRMEHWNWLT 120

Query: 430 ENEVNVSDEKLREENTGNGIIS 495
           +NE N    ++ E     GI S
Sbjct: 121 QNE-NTFQLEVEELRCRLGITS 141


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,548,488
Number of Sequences: 53049
Number of extensions: 501761
Number of successful extensions: 1702
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1702
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2462276481
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)