Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1494
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z73969-4|CAA98235.2|  428|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    28   5.9  
U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeo...    27   7.8  
U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeo...    27   7.8  
AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical ...    27   7.8  

>AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical
            protein K06A5.4 protein.
          Length = 877

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +1

Query: 265  HYQVLQ-RPENRFDLENGNESTESIYQ-NRSAQELWPEGKMKDSDNKNRVKECNWSYENE 438
            H  ++Q RP +R  L+  +    S Y+ N++      +G  K     NR    +   ENE
Sbjct: 804  HLSMMQARPSSR--LKKSSSMNNSTYRGNKNTSISLEKGTQKALKIINRGTTIHEDDENE 861

Query: 439  VNVSDEKLREENT 477
             N  D+ +REE+T
Sbjct: 862  DNDDDDDMREEDT 874


>Z73969-4|CAA98235.2|  428|Caenorhabditis elegans Hypothetical
           protein C12D8.5 protein.
          Length = 428

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 438 FVLVAPIAFFNAILVVRILHLTLRP 364
           F+   PI+    IL+V ++H+TL+P
Sbjct: 9   FLTAHPISVVTTILIVYLIHITLKP 33


>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
           protein F44D12.1 protein.
          Length = 1034

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 226 GGSGAVFFLGTRAHYQVLQRPENRFDLENGNESTESIYQNRSAQ 357
           G   ++   G+  H     R   ++ L  GN  +ES+  NRS+Q
Sbjct: 625 GSDFSISTTGSAMHSYAEGRSNKKYHLPRGNHHSESLLVNRSSQ 668


>U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform a protein.
          Length = 632

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 382 KDSDNKNRVKECNWSYENEVNVSDEKLREENTGNGII 492
           +D +  + + +   +YE +V + DE+  +E   NG I
Sbjct: 563 EDDEELDELNDSELAYEEDVEIGDEEEEDEEQANGDI 599


>U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform b protein.
          Length = 641

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 382 KDSDNKNRVKECNWSYENEVNVSDEKLREENTGNGII 492
           +D +  + + +   +YE +V + DE+  +E   NG I
Sbjct: 572 EDDEELDELNDSELAYEEDVEIGDEEEEDEEQANGDI 608


>AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical
           protein F19B2.6 protein.
          Length = 807

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
 Frame = +1

Query: 253 GTRAHYQVLQRPENRFDLENGNESTESIYQNRSAQELWP---EG-KMKDSDNKNRV-KEC 417
           G +  YQ   +PE  FD  NGN++  +       + ++P   EG    ++DN +    + 
Sbjct: 475 GMQGSYQQNNQPELLFDSNNGNQTVNNAPNGNYQEPVYPLLQEGPTWNNNDNHDYFPSDD 534

Query: 418 NWSYENEVNVSDEKLREE 471
           + S  ++  VS E +R++
Sbjct: 535 SMSQTSQEPVSVESIRKK 552


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,208,794
Number of Sequences: 27780
Number of extensions: 258558
Number of successful extensions: 692
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)