Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1494
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       27   0.19 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.0  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 334 IYQNRSAQELWPEGKMKDSDNKNRVKECNWSYENEVNVSDEKLREENTGNG 486
           I QN +  + W  GK K+S N   + E  ++ EN    +D+K   E TG G
Sbjct: 34  IIQNNNNDD-WSVGK-KNS-NSGTINESEFNDENYWQCNDKKTDIEETGRG 81


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 172 GWHFEISDRS*QLRQMSTGG 231
           GW  EISD+  +LR +   G
Sbjct: 85  GWETEISDQMLELRDLPISG 104


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 292 NRFDLENGNESTESIYQNRSAQELW 366
           N F   NG  ST  +  N +A  +W
Sbjct: 342 NFFTTSNGFRSTLPVVSNLTAMNVW 366


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 292 NRFDLENGNESTESIYQNRSAQELW 366
           N F   NG  ST  +  N +A  +W
Sbjct: 311 NFFTTSNGFRSTLPVVSNLTAMNVW 335


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 292 NRFDLENGNESTESIYQNRSAQELW 366
           N F   NG  ST  +  N +A  +W
Sbjct: 362 NFFTTSNGFRSTLPVVSNLTAMNVW 386


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 292 NRFDLENGNESTESIYQNRSAQELW 366
           N F   NG  ST  +  N +A  +W
Sbjct: 311 NFFTTSNGFRSTLPVVSNLTAMNVW 335


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 149 INVTIQSLDGTLKLAIEVDN 208
           +++T+Q++D T  +   VDN
Sbjct: 188 VSLTVQAMDSTNTMVYMVDN 207


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 138 FVNKSREYYNITILTINTCLVS 73
           F+NK+ +Y   TILT    L++
Sbjct: 84  FINKNDKYEENTILTTMPLLIN 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,244
Number of Sequences: 438
Number of extensions: 3495
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)