Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1493
         (616 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    27   0.17 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    27   0.17 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       26   0.22 
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    24   1.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    24   1.2  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   2.0  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   2.7  
AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochr...    22   4.7  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    21   8.2  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   8.2  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 297 FKMHRHFLCLSLFIFAGYCDANYCRDANLCCPGRDS-SCVVQKAHQN 434
           F   +H+   +    AG+   +  R+    C  +D  SC++ K H+N
Sbjct: 44  FSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRN 90


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 297 FKMHRHFLCLSLFIFAGYCDANYCRDANLCCPGRDS-SCVVQKAHQN 434
           F   +H+   +    AG+   +  R+    C  +D  SC++ K H+N
Sbjct: 44  FSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRN 90


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
 Frame = +3

Query: 351 CDANYCRDANLCCPG-RDSSCVVQKAHQNAIIEDLTDKPCYCDHACLKLGDCCPDFRET 524
           C  N CR+   C     D  C  +   +    +  + K  +CDH   K G  C D  +T
Sbjct: 110 CSPNPCRNNGSCVDRIADFECNCKNGWKG---KTCSLKDSHCDHTTCKNGGTCQDLGKT 165


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 553 AGARGRNAIPPAALGAWCERR 615
           A  +  +A  P A+G WC RR
Sbjct: 103 ASQQSLDASDPDAMGKWCPRR 123


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 553 AGARGRNAIPPAALGAWCERR 615
           A  +  +A  P A+G WC RR
Sbjct: 259 ASQQSLDASDPDAMGKWCPRR 279



 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 103 RPIEGTRFHTKFIIYHSQFFGH 168
           RP     FH ++  Y ++++GH
Sbjct: 433 RPPGDPAFHNQYAHYPAEYYGH 454


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 565 HEPQLETTQSITPQVSRKSGQQSPNFK 485
           HEP L TT+ +  +   K  QQ   FK
Sbjct: 244 HEPLLITTEKLAAEGQTKLPQQPKLFK 270


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 396 SPGSTGSRPGNSSHRNSP 343
           SPG+   R GNS   N+P
Sbjct: 165 SPGAAAGRTGNSLSWNNP 182


>AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q6 protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 93  LISKTNRRHPFPY 131
           L  K N RHPF Y
Sbjct: 112 LPDKVNERHPFAY 124


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 255 FNMYIIFFLN 226
           F MY++FF+N
Sbjct: 153 FQMYVLFFVN 162


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 255 FNMYIIFFLN 226
           F MY++FF+N
Sbjct: 153 FQMYVLFFVN 162


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,552
Number of Sequences: 336
Number of extensions: 2736
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)