Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1493
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    28   1.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   1.6  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   2.8  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    27   2.8  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    26   5.0  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   6.6  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   6.6  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
 Frame = +3

Query: 351 CDANYCRDANLCCPGRD--SSCVVQKAHQNAIIEDLTDKPCYCDHACLKLGDCCPDFRET 524
           C  ++C    LC P  +  SSC  +   +    E +   PC+  H C +   C      +
Sbjct: 708 CKTHFCE--KLCHPDGECESSCKKECGKRRMYCEHVCQSPCHAGHPCDERIPCKAPLEVS 765

Query: 525 C 527
           C
Sbjct: 766 C 766


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = -2

Query: 555 SLKQRNRSLRKSPGSRGNNLPISSKRGHSNKACRLGPQ*WRSGAPSERRRNYPSP 391
           S  Q N+ L KS  S   N PI S   H N+      +  +SGA    +  Y SP
Sbjct: 550 STVQTNKYLPKSSASPPANAPIVSSDVHKNENAGTARRAPQSGAFVASKAKYSSP 604


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 23/90 (25%), Positives = 32/90 (35%)
 Frame = -2

Query: 558 PSLKQRNRSLRKSPGSRGNNLPISSKRGHSNKACRLGPQ*WRSGAPSERRRNYPSPGSTG 379
           P L     ++R +P    NN+P+S            G     S +   + ++  S     
Sbjct: 97  PILNSATSNIRLTPSDTYNNIPVSDTNNEEISKNIYGAPILESTSSDFQSKDSLSTTQPS 156

Query: 378 SRPGNSSHRNSPRK*TSLDKENGGAF*IRN 289
              GN S   SP    SLD E    F I N
Sbjct: 157 VSGGNGSTSQSP---PSLDVEQNKPFSISN 183


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 588 RRWYRIPTTSPSLKQRNRSLRKSPGSRGNNLPISSKRGHSNK 463
           RRW +  TT+   + + +   +SP   G N P   K   + K
Sbjct: 136 RRWSQPKTTTLKTEVKEQQASQSPSVEGENEPAGVKSNEATK 177


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +3

Query: 429 QNAIIEDLTDKPCYCDHACLKLGDCCPDFRETCGVIDCVVSSWGSWSECDTTCGSGSMVR 608
           Q+ I E L+ K  Y D   ++LGD          ++D  V  W    E +    SG M++
Sbjct: 46  QSTISEILSPKYSYLDDGSVRLGDIKKIRAPKFPLLDNAVYEWLQQREVEGLPISGDMIK 105


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -1

Query: 607 RTMLPEPQVVSHSD---HEPQLETTQSITP 527
           + M+P P++V+H D    E +L     ITP
Sbjct: 550 KLMIPSPKIVTHGDAMQEEQRLRQKSQITP 579


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -2

Query: 495  PISSKRGHSNKACRLGPQ*WRSGAPSERRRNYPSPGSTGSRPGNSSHRNS 346
            P +S     N A  LG    R  APS      P PG++ ++P   S  +S
Sbjct: 854  PSTSTTAGWNDAPMLGQLPMRRAAPSMAPVRSPFPGASSAQPAAMSRTSS 903


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,152
Number of Sequences: 5004
Number of extensions: 44449
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)