Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1493
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 33 0.24
09_02_0343 + 7514514-7514948 31 0.73
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 29 2.2
06_03_1183 + 28237467-28237612,28238035-28238089,28238216-282383... 29 2.2
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313... 29 2.9
01_06_0216 + 27618116-27618548,27618960-27619042,27619169-276192... 28 5.1
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241 28 6.8
08_02_1252 + 25595776-25596564 27 8.9
07_03_1191 + 24690936-24691029,24691184-24691377 27 8.9
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 27 8.9
03_01_0004 + 41829-42203,42376-42474,42699-42743,43604-43741,438... 27 8.9
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 32.7 bits (71), Expect = 0.24
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = -2
Query: 558 PSLKQRNRSLRKSPGSRGNNLPISSKRGHSNKACRLGPQ*WRSGAPSERRRNYPSP---- 391
PS ++ + + P S P S R S + R+ R +P RRR PSP
Sbjct: 243 PSAEKATKQQPRKPASPQRK-PAPSPRRRSPPSRRVESPRCRPDSPPIRRRTAPSPIRHG 301
Query: 390 GSTGSRPGNSSHRNSP 343
G+ RPG+ R SP
Sbjct: 302 GTPSRRPGSPIRRRSP 317
>09_02_0343 + 7514514-7514948
Length = 144
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -2
Query: 597 SQSRRWYRIPTTSPSLKQRNRSLRKSPGSRGNNLPISSKRGHSNKACRLGPQ*WRSGAPS 418
+Q+ R R+ ++ R R S G RG +RGH + G WRSG
Sbjct: 53 AQAGRQRRLEAAGAEEREGRRRERSSGGLRGKRRASRGRRGHCDAGGGDGATGWRSGEEG 112
Query: 417 E 415
E
Sbjct: 113 E 113
>07_01_0362 -
2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 438 WRSGAPSERRRNYPSPGSTGSRPGNSSHRNSPRK*TSLDKE 316
+ S PS R+RN GST +P N H + T +D++
Sbjct: 477 FESRGPSSRKRNLEEGGSTADKPLNRLHPADSIEGTVIDRD 517
>06_03_1183 +
28237467-28237612,28238035-28238089,28238216-28238354,
28238433-28238487,28238578-28238646,28239338-28239560,
28239645-28239740,28240708-28240827,28240937-28241062,
28241369-28241524,28242706-28242828,28242913-28242980,
28243119-28243254,28243365-28243530,28243615-28243853
Length = 638
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Frame = +1
Query: 109 IEGTRFHTKF---IIYHSQFFGHLYKRC 183
+EGT +HT+F I Y + ++ +LY RC
Sbjct: 542 VEGTHWHTRFTHLINYGAGYYSYLYARC 569
>08_01_0356 +
3131214-3132443,3132584-3132778,3132892-3132972,
3133324-3133383,3133466-3133560,3133660-3133816,
3133896-3134021,3134398-3134478,3134557-3134647,
3134735-3134868,3135068-3135136,3135219-3135308,
3135405-3135508,3135594-3135762,3136066-3136134
Length = 916
Score = 29.1 bits (62), Expect = 2.9
Identities = 24/82 (29%), Positives = 35/82 (42%)
Frame = -2
Query: 564 TSPSLKQRNRSLRKSPGSRGNNLPISSKRGHSNKACRLGPQ*WRSGAPSERRRNYPSPGS 385
+S S+K R K GS GN PI S + ++ + G + + P+P
Sbjct: 23 SSTSVKNRPTPT-KQEGSSGNAGPIRSPKAVASNQQKNGLTGVSRPLQQRPQSSSPNPRP 81
Query: 384 TGSRPGNSSHRNSPRK*TSLDK 319
GS NSS +S S+DK
Sbjct: 82 LGSGQPNSSKEHSSHNSNSVDK 103
>01_06_0216 +
27618116-27618548,27618960-27619042,27619169-27619225,
27619255-27619407,27619777-27619872,27620103-27620183,
27620184-27620254,27620343-27620385,27620502-27620582,
27620684-27620743,27621018-27621083,27621358-27621455,
27621794-27621842,27621933-27621977,27622845-27623369
Length = 646
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = -2
Query: 549 KQRNRSLRKSPGSRGNNLPISSKRGHSNKACRLGPQ*WRSGAPSERRRNY 400
KQR+R K+ S GNN KRG C Q S S+ R Y
Sbjct: 580 KQRSRKKAKADSSSGNNAENGFKRGKGLAQCDRSHQSAGSSRRSKGPREY 629
>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
Length = 1445
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 438 IIEDLTDKPCYCDHACLKLGDCCPDFRETCGVID 539
+ + +KP + + +CLK CPD E G D
Sbjct: 800 LASNFAEKPAWRNSSCLKTALMCPDLYEQTGTGD 833
>08_02_1252 + 25595776-25596564
Length = 262
Score = 27.5 bits (58), Expect = 8.9
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -2
Query: 594 QSRRWYR--IPTTSPSLKQRNRSLRKSPGSRGNNLPISSKRGHSNKACRLGPQ*WRSGAP 421
Q ++W R +PTT PSL Q +R+S S + S+ A P R P
Sbjct: 96 QRQQWRRQWVPTTLPSLSQIWSEVRQSVSSSSS----------SSTAASAAPPLVRPRLP 145
Query: 420 SERRRNYPSPGS 385
S RR +P P S
Sbjct: 146 SRRRCLHPLPPS 157
>07_03_1191 + 24690936-24691029,24691184-24691377
Length = 95
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +3
Query: 318 LCLSLFIFAGYCDANYCRDANLCCPGRDSSCVVQKAHQNAIIEDLTDKPCYCDH 479
L ++ +F C A+ +A C + C +K HQ + + T YC H
Sbjct: 18 LLIAALLFPAVCYAHV--EAKTVCQKTEYGCTQEKCHQMCLGDGRTVASQYCRH 69
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 607 RTMLPEPQVVSHSDHEPQL-ETTQSITPQVSR 515
+ + P P +V+H H P E TQ+ TP ++
Sbjct: 141 QALTPAPSLVTHPPHSPSTPEKTQAATPSATQ 172
>03_01_0004 +
41829-42203,42376-42474,42699-42743,43604-43741,
43852-44157,44779-45689,45826-46093
Length = 713
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/28 (35%), Positives = 11/28 (39%)
Frame = +3
Query: 474 DHACLKLGDCCPDFRETCGVIDCVVSSW 557
DH L CC + C DC SW
Sbjct: 83 DHRLLSAAACCESCKAMCKANDCRCDSW 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,724,555
Number of Sequences: 37544
Number of extensions: 306551
Number of successful extensions: 1002
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -