Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1493
         (616 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    27   0.48 
AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.         23   7.8  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    23   7.8  

>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 0.48
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = -2

Query: 549 KQRNRSLRKSPGSRGNNLPISSKRGHSNKACRLGPQ*WRSGAPSERRRNYPSPGSTGSRP 370
           K  + S+RK P SR N    S + G    +CR  P   R  + S R  ++P    T S+P
Sbjct: 241 KNAHASIRKIPPSRRNPRRRSPRSGGRWPSCRSPPA--RRRSRSTRPTSWPRSRPT-SKP 297

Query: 369 GNSSHRNSP 343
                R  P
Sbjct: 298 KRLPRRRRP 306


>AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.
          Length = 437

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 99  SKTNRRHPFPY 131
           SKT+ RHPF Y
Sbjct: 316 SKTDHRHPFQY 326


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
 Frame = +3

Query: 465 CYCDHACLKLGDCC--PDFRE-TCGVIDCVVSSWGSWSECDT 581
           C C+      G  C  PD    TCG   C  S  G   EC T
Sbjct: 557 CECNECATIDGSICGGPDHGICTCGTCSCFDSWSGDNCECTT 598


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 611,297
Number of Sequences: 2352
Number of extensions: 12401
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60132501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)