Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1491
         (360 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   0.41 
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    24   0.41 
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   3.8  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    20   8.8  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.2 bits (50), Expect = 0.41
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -3

Query: 217 CPYYCHRVSVCRGSSPHNALCKRCSCRTCLYL**WFHS 104
           C Y C   S+       ++   R SCR C Y   + HS
Sbjct: 264 CDYTCVNKSMLNSHMKSHSNVYRYSCRDCSYATKYCHS 301


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 24.2 bits (50), Expect = 0.41
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -3

Query: 217 CPYYCHRVSVCRGSSPHNALCKRCSCRTCLYL**WFHS 104
           C Y C   S+       ++   R SCR C Y   + HS
Sbjct: 22  CDYTCVNKSMLNSHMKSHSNVYRYSCRDCSYATKYCHS 59


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 8/26 (30%), Positives = 10/26 (38%)
 Frame = -3

Query: 205 CHRVSVCRGSSPHNALCKRCSCRTCL 128
           C     C  +  +   CK C  R CL
Sbjct: 42  CKNNGECVINKKNRTACKACRLRKCL 67


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 222 PLVLTTVTAFQFAEAAVLI 166
           P+V T +   QFA  A LI
Sbjct: 163 PIVTTGIIKIQFATCAHLI 181



 Score = 19.8 bits (39), Expect = 8.8
 Identities = 6/15 (40%), Positives = 7/15 (46%)
 Frame = -3

Query: 169 HNALCKRCSCRTCLY 125
           HN LC  C     +Y
Sbjct: 218 HNELCNLCQVANSIY 232


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,705
Number of Sequences: 336
Number of extensions: 1955
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7299165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)