Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1491
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    25   3.5  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    25   4.7  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    24   6.2  

>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -1

Query: 273 QTCTGIDF--GYVAQRLKQPLVLTTVTAFQFAEAAVLITLFVSVAVVEHAFTFSNGFIPV 100
           +T  GIDF  G  A  +K    L+ V   ++  +  LI+         + FT+S   +P+
Sbjct: 196 ETKDGIDFYFGQRAHAIKMVEFLSAVVPIRYKGSEELISEDFKSNTANYKFTYSIEIVPI 255

Query: 99  SPESM 85
             + +
Sbjct: 256 CKDDL 260


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 358 FTGLFLFSSFSAVNVLPHDQRFWHYPEEPDV 266
           F G+FLF      +   H  + + +PEE D+
Sbjct: 127 FVGIFLFHDHGHDHPHTHTAQNYDFPEEDDI 157


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 243 VAQRLKQPLVLTTVTAFQFAEAAVLITLF 157
           +  RL    +LTT  + QF EA  ++TL+
Sbjct: 190 IVDRLISEELLTTSPSLQFFEAVSMLTLY 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,521,190
Number of Sequences: 5004
Number of extensions: 28944
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)