Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1491
(360 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0529 - 11208973-11211143,11211703-11211772,11211993-112120... 31 0.27
02_01_0397 - 2877242-2878479,2878557-2878861,2879862-2880549,288... 31 0.36
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 28 1.9
04_04_1145 + 31239317-31239784,31245773-31245916,31246635-312468... 28 1.9
10_08_1013 - 22239396-22239536,22240629-22240715,22240787-22241131 28 2.5
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481... 27 5.9
11_05_0006 + 18316064-18316258,18316458-18316507,18317826-183178... 27 5.9
>02_02_0529 -
11208973-11211143,11211703-11211772,11211993-11212049,
11212769-11212819,11213112-11213264,11216095-11216255,
11216609-11216642
Length = 898
Score = 31.1 bits (67), Expect = 0.27
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 274 PDVHRHRFWLCSSTP*ATPCPYYCHRVSVC 185
P+ R L STP AT P+ CH++ VC
Sbjct: 89 PNTQRPEVLLLFSTPIATTAPFPCHQLMVC 118
>02_01_0397 -
2877242-2878479,2878557-2878861,2879862-2880549,
2881998-2882016
Length = 749
Score = 30.7 bits (66), Expect = 0.36
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3
Query: 208 YCHRVSVCRGS-SPHNALCKRCSCRTC 131
+CH ++ CR + +P + C+RCSC C
Sbjct: 142 FCHNLA-CRATLNPEDKFCRRCSCCIC 167
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 28.3 bits (60), Expect = 1.9
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +1
Query: 19 KFHYHMLFILNGNKAQQDGVIAHAFGRYWNETITKGKGMFYNCNAYKERYEDCCLGKLKR 198
K H+L +G + GV G Y + ++ K + + YN Y ++ LG+++
Sbjct: 3627 KRRLHLLLAFHGELSDGAGV-----GAYSSNSLKKIQNILYNMFGYYMQFLPLVLGEIEG 3681
Query: 199 GDSSKDKGL 225
G S +K L
Sbjct: 3682 GKGSIEKDL 3690
>04_04_1145 +
31239317-31239784,31245773-31245916,31246635-31246875,
31247213-31247713,31247851-31248263
Length = 588
Score = 28.3 bits (60), Expect = 1.9
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = -1
Query: 264 TGIDFGYVAQRLKQPLVLTTVTAFQFA--EAAVLITLFVSVAVVEHAFTFSNGFIPVS-P 94
+G+D G + RL+ +++T + +FA + AV F VA V A S+G +PV+ P
Sbjct: 428 SGVDLGRLLDRLELDIIITNESLQEFAYYKDAVQQQRFALVAAVTSAVGESSG-VPVAIP 486
Query: 93 E 91
E
Sbjct: 487 E 487
>10_08_1013 - 22239396-22239536,22240629-22240715,22240787-22241131
Length = 190
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = -3
Query: 217 CPYYCHRVSVCR----GSSPHNALCKRCSCRTC 131
C Y H S C G++PH+ C++C C C
Sbjct: 118 CRDYPHPRSACAKFPFGTTPHDDHCEQCFCYVC 150
>12_02_0616 -
21246374-21246462,21246605-21247702,21247800-21248110,
21248550-21249251,21252802-21252912,21253396-21253481,
21253753-21253862,21254085-21254236,21254656-21254765
Length = 922
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = -3
Query: 220 PCPYYCHRVSVCRGSSPHNALCKRCSCRTC 131
P + C + + N CKRCSC C
Sbjct: 327 PSTWICKNAACKAVLTADNTFCKRCSCCIC 356
>11_05_0006 +
18316064-18316258,18316458-18316507,18317826-18317886,
18317972-18318007,18318852-18318902,18321271-18321375,
18321508-18321600,18321698-18321841
Length = 244
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 316 VLPHDQRFWHYPEEPDVHRHRFWLCSSTP*ATPC 215
VL +Q FW PE+P R RF++ P C
Sbjct: 97 VLYFEQAFWRSPEKP--FRQRFYMVKPCPKDMKC 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,123,879
Number of Sequences: 37544
Number of extensions: 199001
Number of successful extensions: 524
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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