Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1491
         (360 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)                   30   0.65 
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)               29   1.1  
SB_51344| Best HMM Match : K_tetra (HMM E-Value=6e-18)                 29   1.1  
SB_58260| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.0  
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_29666| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)            27   4.6  
SB_11282| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_40140| Best HMM Match : SASP_gamma (HMM E-Value=0.36)               27   6.1  
SB_19552| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_31717| Best HMM Match : I-set (HMM E-Value=2.9e-10)                 26   8.0  
SB_3994| Best HMM Match : RIIa (HMM E-Value=6.2)                       26   8.0  
SB_46724| Best HMM Match : I-set (HMM E-Value=6.1e-11)                 26   8.0  
SB_26001| Best HMM Match : HEAT (HMM E-Value=3.6)                      26   8.0  

>SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)
          Length = 416

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 232 P*ATPCPYYCHRVSVCRGSSPHN-ALCKRCSCRT-CLYL 122
           P + PCPY    VSVC+       ++C+ C  RT C Y+
Sbjct: 352 PVSVPCPYVNRAVSVCQPCCVRTVSVCQPCCVRTICPYV 390


>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
          Length = 1712

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 169  HNALCKRCSCRTCLYL**WFHS-SISRKHEQSRHPVVPYYHL 47
            HNA   +C C  C YL    H   +S+KH  S  P     H+
Sbjct: 1257 HNAEPAKCDCSQCDYLRGLEHQLKLSKKHTDSSDPSFDVQHI 1298


>SB_51344| Best HMM Match : K_tetra (HMM E-Value=6e-18)
          Length = 307

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 26/91 (28%), Positives = 42/91 (46%)
 Frame = +1

Query: 22  FHYHMLFILNGNKAQQDGVIAHAFGRYWNETITKGKGMFYNCNAYKERYEDCCLGKLKRG 201
           F Y + F+  G     +G       +Y+ E +T+ +  FY      E  +    GK+K G
Sbjct: 136 FRYILTFLRTGKLTVPEGY------KYFRELLTEAE--FYRLEPLVELIK----GKIKEG 183

Query: 202 DSSKDKGLLKALSYITKIDACARLVLPGNAR 294
           + +K+KG L+ L Y  K      +VL GN +
Sbjct: 184 EKAKEKGYLR-LRYNKK--TTKGVVLSGNLK 211


>SB_58260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
 Frame = +1

Query: 10  PQRKFHYHMLFILNGNKAQQDGVI-----AHAFGRYWNETITK 123
           PQ  + Y++LF    N+ +  GVI     +H FG+YW+  +T+
Sbjct: 25  PQHDWDYYVLFGATLNR-KGTGVIYRATGSHVFGKYWDGHVTR 66


>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 217 CPYY--CHRVSVCRGSSPHNALCKRCSCR 137
           C +Y  C   S+CRG+S H   C    C+
Sbjct: 905 CSHYLECELPSLCRGASDHEGQCDVSCCQ 933


>SB_29666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 184 RGSSP-HNALCKRCSCRTC 131
           RG+ P +NA+C+RC  + C
Sbjct: 132 RGNCPAYNAICRRCKAKVC 150


>SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)
          Length = 310

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 237 QRLKQPLVLTTVTAFQFAEAAVLITLFVSVAVV 139
           QR +QP  +TT TA   A   V++ + V V VV
Sbjct: 102 QRSQQPHKITTTTAAAAAAVVVVVVVVVVVVVV 134


>SB_11282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 85  HAFGRYWNETITKGKGMFYNCNAYKERYEDCCLGKLKRGDSSKDKGLLKALSYITKID 258
           H  G     +  + KG+ +N NA+K   + C  G L     ++ K +LK LSY   ++
Sbjct: 98  HGDGFVTKHSTNEKKGLSFNVNAFKAHVQSC--GTL----PTEVKNVLKKLSYNRSVE 149


>SB_40140| Best HMM Match : SASP_gamma (HMM E-Value=0.36)
          Length = 704

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 40  FILNGNKAQQDGVIAHAFGRYWNETITKGKGMFYNCNAYKER 165
           FILN  +  +DG IA +      +T+T   G   NC   K++
Sbjct: 480 FILNDQQCSKDGTIASSNSDPQTDTVTNETG---NCTELKQK 518


>SB_19552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 124 GKGMFYNCNAYKERYEDCCLGKLKRGDSSKDKGLLKALSYITKID 258
           G+G F  C   K R  D  + KLKR D    +G  +   +I   D
Sbjct: 136 GRGSFGKCFLAKNRGIDVVVKKLKRNDERARRGGARRKDHIFSRD 180


>SB_31717| Best HMM Match : I-set (HMM E-Value=2.9e-10)
          Length = 84

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 67  QDGVIAHAFGRYWNETITKGKGMFYNCNAYKERYED 174
           +DGV+      Y++ ++T+ +   Y C A  E   D
Sbjct: 39  RDGVVVSQTSVYYSNSVTRSEAGTYTCTATNEMGSD 74


>SB_3994| Best HMM Match : RIIa (HMM E-Value=6.2)
          Length = 216

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 88  HEQSRHPVVPYYH 50
           H ++RHP+VPY H
Sbjct: 197 HLEARHPIVPYEH 209


>SB_46724| Best HMM Match : I-set (HMM E-Value=6.1e-11)
          Length = 133

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 67  QDGVIAHAFGRYWNETITKGKGMFYNCNAYKERYED 174
           +DGV+      Y++ ++T+ +   Y C A  E   D
Sbjct: 88  RDGVVVSQTSVYYSNSVTRSEAGTYTCTATNEMGSD 123


>SB_26001| Best HMM Match : HEAT (HMM E-Value=3.6)
          Length = 450

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 142 NCNAYKERYEDCCLGKLKRG 201
           NC       +DCC+G+L RG
Sbjct: 322 NCRNQPRSVKDCCVGQLGRG 341


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,817,162
Number of Sequences: 59808
Number of extensions: 238348
Number of successful extensions: 573
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)