Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1491
(360 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64845-6|AAC48028.1| 556|Caenorhabditis elegans Hypothetical pr... 30 0.56
U64851-1|AAC47990.2| 186|Caenorhabditis elegans Ground-like (gr... 29 1.3
AF016665-4|AAC71180.1| 347|Caenorhabditis elegans Nuclear hormo... 27 3.0
Z68220-1|CAA92484.1| 216|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z83120-9|CAB05589.2| 773|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z81515-11|CAB04199.2| 773|Caenorhabditis elegans Hypothetical p... 27 5.2
AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase ... 27 5.2
AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered cut... 27 5.2
AF011893-1|AAC27124.1| 773|Caenorhabditis elegans maternal-effe... 27 5.2
AF273829-1|AAG15178.1| 372|Caenorhabditis elegans nuclear recep... 26 9.1
AC024776-16|AAL32242.1| 363|Caenorhabditis elegans Nuclear horm... 26 9.1
>U64845-6|AAC48028.1| 556|Caenorhabditis elegans Hypothetical
protein F45F2.5 protein.
Length = 556
Score = 29.9 bits (64), Expect = 0.56
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = -1
Query: 270 TCTGIDFGYVAQRLKQPLVLTTVTAFQFAEAAVLI-TLFVSVAVVEHAFTFSNGFIPVSP 94
+C G+D + +K+P T+ +F VL+ T+F+ +A +T +N + P
Sbjct: 409 SCAGMDLYINDKMIKEPASYITIVSFTLRITEVLVQTIFILIATRMRCYTQTNCY--TEP 466
Query: 93 ESMSNHAILLCLITI 49
+L+C I +
Sbjct: 467 GKQVITFLLVCNINL 481
>U64851-1|AAC47990.2| 186|Caenorhabditis elegans Ground-like (grd
related) protein12 protein.
Length = 186
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -3
Query: 244 CSSTP*ATPCPYYCHRVSVCRGSSPHNALCKRCSCRTC 131
CS TP + CP C + C SP A C +C TC
Sbjct: 31 CSCTPPPSTCPTTCLPIMTCTPPSP-PACCN--TCGTC 65
>AF016665-4|AAC71180.1| 347|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 75 protein.
Length = 347
Score = 27.5 bits (58), Expect = 3.0
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -3
Query: 211 YYCHRVSVCRGSSPHNALCKRCSCRTCLYL**WFHSSISRKHEQSRHPVVP 59
Y C R + C S LC+ C CL + +SR +E SR +P
Sbjct: 76 YACSRNNNCATSYERKILCRACRYTNCL------EAGMSRGNEASRQRNIP 120
>Z68220-1|CAA92484.1| 216|Caenorhabditis elegans Hypothetical
protein T20D3.1 protein.
Length = 216
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 267 TSGSSG*CQNLWSWGSTFTAEKEENK 344
TSG S C +W W ST T+ E K
Sbjct: 165 TSGYSHNCALMWIWASTGTSPYEHGK 190
>Z83120-9|CAB05589.2| 773|Caenorhabditis elegans Hypothetical
protein R06A4.7 protein.
Length = 773
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Frame = -3
Query: 196 VSVCRGSSPHNALCKRCSCR---TCLYL 122
++ CR + P NA + C+CR C Y+
Sbjct: 528 ITACRHAGPCNATAENCACRENGVCSYM 555
>Z81515-11|CAB04199.2| 773|Caenorhabditis elegans Hypothetical
protein R06A4.7 protein.
Length = 773
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Frame = -3
Query: 196 VSVCRGSSPHNALCKRCSCR---TCLYL 122
++ CR + P NA + C+CR C Y+
Sbjct: 528 ITACRHAGPCNATAENCACRENGVCSYM 555
>AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase
protein.
Length = 1497
Score = 26.6 bits (56), Expect = 5.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 349 LFLFSSFSAVNVLPHDQRFWHY 284
+F+ F A+N++ +RFWHY
Sbjct: 988 VFIVFCFVAINLVLFFERFWHY 1009
>AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered cuticle
protein 3 protein.
Length = 1497
Score = 26.6 bits (56), Expect = 5.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 349 LFLFSSFSAVNVLPHDQRFWHY 284
+F+ F A+N++ +RFWHY
Sbjct: 988 VFIVFCFVAINLVLFFERFWHY 1009
>AF011893-1|AAC27124.1| 773|Caenorhabditis elegans maternal-effect
sterile 2 protein.
Length = 773
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Frame = -3
Query: 196 VSVCRGSSPHNALCKRCSCR---TCLYL 122
++ CR + P NA + C+CR C Y+
Sbjct: 528 ITACRHAGPCNATAENCACRENGVCSYM 555
>AF273829-1|AAG15178.1| 372|Caenorhabditis elegans nuclear receptor
NHR-87 protein.
Length = 372
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 208 YCHRVSVCRGSSPHNALCKRCSCRTCL 128
Y V+ C S NALCK C CL
Sbjct: 51 YGEPVNSCEVISTGNALCKGCRLAKCL 77
>AC024776-16|AAL32242.1| 363|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 87 protein.
Length = 363
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 208 YCHRVSVCRGSSPHNALCKRCSCRTCL 128
Y V+ C S NALCK C CL
Sbjct: 42 YGEPVNSCEVISTGNALCKGCRLAKCL 68
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,587,218
Number of Sequences: 27780
Number of extensions: 169985
Number of successful extensions: 495
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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