Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1491
(360 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00840.1 68417.m00115 zinc finger (DHHC type) family protein ... 29 1.2
At3g24440.1 68416.m03067 fibronectin type III domain-containing ... 28 1.6
At1g66440.1 68414.m07548 DC1 domain-containing protein contains ... 27 5.0
At3g54070.1 68416.m05978 ankyrin repeat family protein contains ... 26 6.6
At1g54340.1 68414.m06195 isocitrate dehydrogenase, putative / NA... 26 6.6
At4g31120.2 68417.m04418 Skb1 methyltransferase family protein c... 26 8.7
At4g31120.1 68417.m04417 Skb1 methyltransferase family protein c... 26 8.7
At3g21330.1 68416.m02694 basic helix-loop-helix (bHLH) family pr... 26 8.7
At2g24790.2 68415.m02963 zinc finger (B-box type) family protein 26 8.7
At2g24790.1 68415.m02964 zinc finger (B-box type) family protein 26 8.7
>At4g00840.1 68417.m00115 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 262
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 214 PYYCHRVSVCRGSSPHNALCKRC 146
P CH SVC+ S LC+RC
Sbjct: 56 PPRCHHCSVCKAKSDLFILCQRC 78
>At3g24440.1 68416.m03067 fibronectin type III domain-containing
protein contains Pfam profile PF00041: Fibronectin type
III domain
Length = 602
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -3
Query: 211 YYCHRVSVCRGSSP-HNALCKRCSCRTC 131
+ C S CR + P ++ CKRCSC C
Sbjct: 47 WICKNAS-CRANVPKEDSFCKRCSCCVC 73
>At1g66440.1 68414.m07548 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 726
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = +1
Query: 100 YWNETITKG---KGMFYNCNAY--KERYEDCCLGK---LKRGDSSKDKG 222
YW E + KG FYNC+ Y + +C +GK +K G S KG
Sbjct: 624 YWCEACERKINPKGQFYNCDEYGCVTLHIECLIGKDLYMKPGSSWLFKG 672
>At3g54070.1 68416.m05978 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 574
Score = 26.2 bits (55), Expect = 6.6
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -1
Query: 171 LITLFVSVAVVEHAFTFSNGFIPVSPESMSNHAILLCLITI*NK*HVVMKFTLW 10
L LF+S+ + AFTFS I V S+S ++ CL ++ + F LW
Sbjct: 497 LSALFISIISMILAFTFSMILIRVEKASLS-LVLISCLASLTALTFAYLYFHLW 549
>At1g54340.1 68414.m06195 isocitrate dehydrogenase, putative / NADP+
isocitrate dehydrogenase, putative strong similarity to
NADP-isocitrate dehydrogenase GI:5764653 from [Citrus
limon]; Nicotiana tabacum SP|P50218
Length = 416
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 151 AYKERYEDCCLGKLKRGDSSKDKGLL 228
+Y E+ E C+G ++ G +KD LL
Sbjct: 355 SYTEKLEAACMGTVESGKMTKDLALL 380
>At4g31120.2 68417.m04418 Skb1 methyltransferase family protein
contains Pfam profile: PF05185 Skb1 methyltransferase
Length = 584
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 322 VNVLPHDQRFWHYPEEPDV 266
V ++ D RFW+ PE+ D+
Sbjct: 420 VTIISCDMRFWNAPEQADI 438
>At4g31120.1 68417.m04417 Skb1 methyltransferase family protein
contains Pfam profile: PF05185 Skb1 methyltransferase
Length = 642
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 322 VNVLPHDQRFWHYPEEPDV 266
V ++ D RFW+ PE+ D+
Sbjct: 420 VTIISCDMRFWNAPEQADI 438
>At3g21330.1 68416.m02694 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 373
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 288 CQNLWSWGSTFTAEKEENK 344
CQ LWS+G +AE E +
Sbjct: 116 CQTLWSFGGVSSAESENRE 134
>At2g24790.2 68415.m02963 zinc finger (B-box type) family protein
Length = 220
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -3
Query: 190 VCRGSSPHNALCKRCSCRTCLYL**WFHSS--ISRKHEQSRHPVVPYY 53
VC +P + CK + C+ HS+ +SR+HE R P+ P+Y
Sbjct: 53 VCE-QAPAHVTCKADAAALCVTCDRDIHSANPLSRRHE--RVPITPFY 97
>At2g24790.1 68415.m02964 zinc finger (B-box type) family protein
Length = 294
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -3
Query: 190 VCRGSSPHNALCKRCSCRTCLYL**WFHSS--ISRKHEQSRHPVVPYY 53
VC +P + CK + C+ HS+ +SR+HE R P+ P+Y
Sbjct: 53 VCE-QAPAHVTCKADAAALCVTCDRDIHSANPLSRRHE--RVPITPFY 97
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,104,507
Number of Sequences: 28952
Number of extensions: 159467
Number of successful extensions: 481
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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