Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1489
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 34 0.015
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 34 0.019
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 34 0.019
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 33 0.025
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 33 0.044
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 30 0.31
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 29 0.41
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 29 0.55
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 26 3.8
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 26 3.8
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 26 5.1
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 25 6.7
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 6.7
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 6.7
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 25 8.9
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 25 8.9
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 34.3 bits (75), Expect = 0.015
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +1
Query: 433 LDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRI 594
L ++HNN+T+L E+ +L +V LD S N I+ + L +L + L +N I
Sbjct: 186 LYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGLLTELREVLLFDNMI 239
Score = 26.6 bits (56), Expect = 2.9
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +1
Query: 412 KHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNR 591
K N+ ILD S N+I + EL LTE+ + L N I + L +L L + N
Sbjct: 202 KLKNLVILDASGNSIKTIPPELGLLTELREVLLFDNMISVIPAELGTLFQLKILGIEGNP 261
Query: 592 IKEL 603
++++
Sbjct: 262 LQDV 265
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 33.9 bits (74), Expect = 0.019
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 421 NINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANN 588
N+ LDLS+NN + L+++ TL+ S N + ++ + + KL HL L N
Sbjct: 526 NLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQISSKIGSLVKLKHLYLQFN 581
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 418 HNINILDLSHNNITKLNHE-LDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRI 594
H + L++SHN L + ++R ++ LD+S N K + ++L LN++ N I
Sbjct: 429 HELISLNVSHNLSLDLPLDFMERCVKLKRLDISNNLRSPRGKPITALRQLEVLNMSRNDI 488
Query: 595 KELAIVAF 618
EL + F
Sbjct: 489 YELDPLIF 496
Score = 26.6 bits (56), Expect = 2.9
Identities = 17/66 (25%), Positives = 34/66 (51%)
Frame = +1
Query: 367 TCSNLAELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFL 546
+C+N Y K ++ LDL NNI E+ +++ + ++LS+N ++ + +
Sbjct: 712 SCTNCEMSYVSPNLGKLKHLVHLDLHANNIKIFPEEVWQVSSLKVVNLSSNILEKIKLPV 771
Query: 547 HNAKKL 564
+KKL
Sbjct: 772 ATSKKL 777
Score = 25.0 bits (52), Expect = 8.9
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Frame = +1
Query: 502 LDLSTNGIQNL------NKFLHNAKKLVHLNLANN 588
LD+STN +QNL K L +L +LNL+ N
Sbjct: 905 LDISTNNLQNLAVEKAEKKSLTKLPQLEYLNLSGN 939
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 33.9 bits (74), Expect = 0.019
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 433 LDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLH-NAKKLVHLNLANNRIKELA 606
LDLS N +T++ + L L ++ +L+L++N I F H + L L L+ N + L+
Sbjct: 361 LDLSGNELTEIPYALGELPQLCSLNLASNKITGCRTFYHISLSHLQILVLSRNHLTSLS 419
Score = 28.3 bits (60), Expect = 0.95
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 484 LTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRI 594
L +V+LDLS N + + L +L LNLA+N+I
Sbjct: 355 LQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKI 391
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 33.5 bits (73), Expect = 0.025
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +1
Query: 421 NINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKE 600
N+ LD+S+N + L L L + L + +N + +L+ H L+ L+ NNRIKE
Sbjct: 669 NLQYLDISYNQLEDLTG-LSSLIHLRELKVDSNHLWSLDGIQH-LDGLLKLSACNNRIKE 726
Query: 601 LA 606
L+
Sbjct: 727 LS 728
Score = 28.7 bits (61), Expect = 0.72
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +1
Query: 421 NINILDLSHNNITKLNHELDRLTEVVTLDLSTNGI---QNLNKFLHNAKKLVHLNLANN 588
N+ +LDLSHN I+ + L L + L L N I +NL L N K+L L+L N
Sbjct: 892 NLRVLDLSHNYISDI-ESLKPLQMIHRLYLVGNRIKKMRNLCDILANLKQLNVLDLRMN 949
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 32.7 bits (71), Expect = 0.044
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = +1
Query: 409 QKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANN 588
++ N+ L L N I K+ + LTE LDL N I + L N K L +L+L+ N
Sbjct: 59 ERFKNLQSLCLRQNQIKKIESVPETLTE---LDLYDNLIVRIEN-LDNVKNLTYLDLSFN 114
Query: 589 RIKEL 603
IK +
Sbjct: 115 NIKTI 119
Score = 29.1 bits (62), Expect = 0.55
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +1
Query: 421 NINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIK 597
N+ LDLS NNI K ++ L + L N I+ + L +L +L L N+I+
Sbjct: 105 NLTYLDLSFNNI-KTIRNINHLKGLENLFFVQNRIRRIEN-LEGLDRLTNLELGGNKIR 161
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 29.9 bits (64), Expect = 0.31
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Frame = +1
Query: 490 EVVTLDLSTNGIQNLNKFLHNAK---KLVHLNLANNRIKELA 606
+V+++ LS N +Q++ A+ KL++L+LANNRI L+
Sbjct: 215 DVISVSLSDNNLQSVTAVTTLAQTWPKLLNLSLANNRITSLS 256
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 29.5 bits (63), Expect = 0.41
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +1
Query: 412 KHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNR 591
K + L++ N + + L RL + LD+S N I+ L + L L+++ NR
Sbjct: 73 KFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQLPESFGALMNLKVLSISKNR 132
Query: 592 IKEL 603
+ EL
Sbjct: 133 LFEL 136
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 29.1 bits (62), Expect = 0.55
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +1
Query: 361 RATCSNLAELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNK 540
RA+ SN E K + + N +L ++ + + + LTE S NG+Q+L +
Sbjct: 302 RASFSNFMENEKKLYEKVNTNRTLLRNANLTLNEAQQSVKSLTERQGPRPSDNGVQDLQE 361
Query: 541 FLH--NAKKLVHLN 576
+ NA+KL H N
Sbjct: 362 KMQEVNAEKLQHEN 375
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 379 LAELYKFTLRQKHHNINILDLSHNN-ITKLNHELDRLTEVV 498
L+ ++K HNI+I+DL+H N I L + VV
Sbjct: 170 LSTVFKNLALASSHNIHIVDLNHRNPIDSLTTHTSMINSVV 210
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 26.2 bits (55), Expect = 3.8
Identities = 23/71 (32%), Positives = 32/71 (45%)
Frame = +1
Query: 355 LHRATCSNLAELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNL 534
L + +++AEL TL H + LD+S NNI + LD L + L +
Sbjct: 273 LSSTSLADVAELPVHTL----HKLTFLDISENNIRDI-RSLDHLRTLENLKHLRITLSYF 327
Query: 535 NKFLHNAKKLV 567
NK AK LV
Sbjct: 328 NKPTDIAKLLV 338
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 316 CPESCVCSTTRDGLHRATCSNLAELYKFTLRQKHHNINILDLS 444
CP+ V TRD ++ A + + K Q N +ILD S
Sbjct: 466 CPKHMVWMDTRDEIYEAIMDSGYNMEKGFFAQSFENNDILDAS 508
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1
Query: 385 ELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEVVT 501
ELY F+++QK+ ++ ++ N+ +LN L ++ V T
Sbjct: 641 ELYSFSVKQKNQRTHVFSVT--NVDELNDWLVKINFVST 677
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.4 bits (53), Expect = 6.7
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +1
Query: 382 AELYKFTLRQKHHNINILDLSHNNITKLN---HELDRLTEVVTLDLSTNGIQNLNKFLHN 552
++L+ +LRQ++ + N+L+L + T L+ + LD ++E+V +G++ +
Sbjct: 473 SDLWIKSLRQEYESKNLLELLDKHQTALSSVENRLDEISEIVDSYHKYSGVRTKLQVFEE 532
Query: 553 AKKLVHLNLAN 585
K LAN
Sbjct: 533 NKTNKSAILAN 543
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 400 TLRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGI 525
T+R ++H +N +L H + + RL + LD S+ G+
Sbjct: 911 TIRTRYHGMNCQNLIHYSFSYAIEFAQRLMRLSILDASSIGL 952
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 25.0 bits (52), Expect = 8.9
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 421 NINILDLSHNNITKLNHELDRLTEVV-TLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIK 597
N +D+ + T++ L+ T++V TLD S +G+ N +L +LN+ +N K
Sbjct: 342 NTEFIDVISTDGTQVFGVLEGHTDIVLTLDSSEDGVWLATGAKDNTVRLWNLNIEDNVYK 401
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 25.0 bits (52), Expect = 8.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 409 QKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFL 546
Q + N + DLS + L ++L R+ V +L N +NLN+++
Sbjct: 72 QSYLNDVLQDLSEDEFVSLYNKLLRIHMGVRKNLEKNFYKNLNEYV 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,154
Number of Sequences: 5004
Number of extensions: 45028
Number of successful extensions: 150
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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