Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1488
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   4.4  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    25   5.8  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +3

Query: 102 EITNIVNFFFCYVY 143
           EI +I+NFFFC+++
Sbjct: 789 EINSILNFFFCFLH 802


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 156 DFQTNKRNKKKSSQYS*FLKTLLYFNAFKYVLI 58
           ++QT ++NK K S++    K +L  + F  +L+
Sbjct: 277 NYQTEEKNKNKQSKWQKLWKAVLEVDLFGLILL 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,909,936
Number of Sequences: 5004
Number of extensions: 33077
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)