Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1488
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger) fa...    29   2.1  
At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger) fa...    29   2.1  
At4g38570.1 68417.m05460 CDP-diacylglycerol--inositol 3-phosphat...    28   5.0  

>At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|Q06003 Goliath
           protein (G1 protein) {Drosophila melanogaster}; contains
           Pfam profile PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 381

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = -1

Query: 278 GFRVILVNYRIKALCIFSIREFCCINCISIRRE*LFAAKNVTSK--LINVTKKKVHNIRD 105
           GF V  V + +   C+  I   CC+ CI I      A +   SK  +  +TK K   + D
Sbjct: 228 GFDVFFVVFCVALACVIGIAVCCCLPCI-IAVLYAVAEQEGASKEDIDQLTKFKFRKVGD 286

Query: 104 FSKH 93
             KH
Sbjct: 287 TMKH 290


>At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|Q9NVW2 RING finger
           protein 12 (LIM domain interacting RING finger protein)
           {Homo sapiens}; contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 368

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -1

Query: 278 GFRVILVNYRIKALCIFSIREFCCINCISIRRE*LFAAKNVTSK--LINVTKKKVHNIRD 105
           GF V  V + +   C+  I   CC+ CI I      A +   SK  +  +TK K   + D
Sbjct: 218 GFDVFFVVFCVALACVIGIAVCCCLPCI-IAVLYAVADQEGASKEDIEQLTKFKFRKLGD 276

Query: 104 FSKH 93
            +KH
Sbjct: 277 ANKH 280


>At4g38570.1 68417.m05460 CDP-diacylglycerol--inositol
           3-phosphatidyltransferase, putative /
           phosphatidylinositol synthase, putative similar to
           phosphatidylinositol synthase (PIS1) - Arabidopsis
           thaliana, PID:e1313354 [gi:3367632]
          Length = 225

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -1

Query: 215 FCCINCISIRRE*LFAAKNVTSKLINVTKKKVHNIRDFSKHCCILMHLNMF*YNKK 48
           +CC++C  +    L  A N T  L+NV  K +  I   S    +L+ L++F ++ K
Sbjct: 147 YCCVSCEVLYIILLLIATNQTENLMNVVVKSLMQISPLS----LLLALSIFGWSIK 198


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,564,886
Number of Sequences: 28952
Number of extensions: 157893
Number of successful extensions: 354
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)