Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1487
         (607 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    24   0.86 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   2.0  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   4.6  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   6.1  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 187 HRQDHRGWRRFFQHFLQRDRSWQHVPR 267
           +R++ +GW+   +H L  ++ +  VPR
Sbjct: 120 YRENKQGWQNSIRHNLSLNKCFVKVPR 146


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = -1

Query: 454 QRACGFCPKPNLRFPFQWCSDHGHSCW 374
           Q  C +   PN       C+D   SCW
Sbjct: 15  QLECNWSSGPNATLQSSACTDDLSSCW 41


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = -1

Query: 490 EDQESLQTGYTGQRACGFCPKPNLRFPFQWCSDHG 386
           +D+  +     G +  GF  + ++R   +W  D+G
Sbjct: 386 DDEMKVPYAVNGDQWIGFDDEKSIRNKMKWIKDNG 420


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 200 IGGGDDSFNTFFSETGAGSTY 262
           +GGGD S N+      A  TY
Sbjct: 112 LGGGDTSPNSALQRARADKTY 132



 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 187 HRQDHRGWRRFFQHFLQRDRSWQHVPR 267
           +RQ+ + W+   +H L  +  +  VPR
Sbjct: 177 YRQNQQRWQNSIRHSLSFNDCFVKVPR 203


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,143
Number of Sequences: 336
Number of extensions: 3640
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)