Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1487
(607 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 166 2e-42
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 162 4e-41
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 94 1e-20
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 73 3e-14
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 28 1.2
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 2.1
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 27 2.8
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 26 3.7
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 4.9
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 4.9
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 6.5
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 6.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.6
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 25 8.6
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 166 bits (404), Expect = 2e-42
Identities = 75/129 (58%), Positives = 97/129 (75%)
Frame = +1
Query: 220 FQHFLQRDRSWQHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 399
F F ++VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHY
Sbjct: 49 FSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHY 108
Query: 400 TIGKEIVDLVLDRIRKLADQCTRSARIPDLPLLRWRSGSGFTSLLMERLSVDYGKKSKLE 579
T+GKE+VD V D+IR++AD C+ +GSGF +LL+ERL+++Y KKSKL+
Sbjct: 109 TVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQ 168
Query: 580 FGIYPAPQV 606
F +YPAPQV
Sbjct: 169 FSVYPAPQV 177
Score = 106 bits (254), Expect = 3e-24
Identities = 58/148 (39%), Positives = 71/148 (47%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG G
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 257 TYPVXXXXXXXXXXXXXXXXAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLERKS*IWFWT 436
P F L+ ++ + ++
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 437 ESASSLTSVPGLQGFLIFHSFGGGPALG 520
+ + GLQGFL+FHSFGGG G
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSG 148
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 162 bits (393), Expect = 4e-41
Identities = 71/129 (55%), Positives = 96/129 (74%)
Frame = +1
Query: 220 FQHFLQRDRSWQHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 399
F F + VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHY
Sbjct: 53 FGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHY 112
Query: 400 TIGKEIVDLVLDRIRKLADQCTRSARIPDLPLLRWRSGSGFTSLLMERLSVDYGKKSKLE 579
T+GKE++D VL+RIR++AD C+ +GSG +LL+ERL+++YGKKS L+
Sbjct: 113 TVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQ 172
Query: 580 FGIYPAPQV 606
F +YPAPQV
Sbjct: 173 FSVYPAPQV 181
Score = 99 bits (238), Expect = 2e-22
Identities = 61/153 (39%), Positives = 72/153 (47%), Gaps = 5/153 (3%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 241
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 242 TGAGSTYPVXXXXXXXXXXXXXXXXAHTDSCFIQNNLLLVRKMRXXXXXXXXXXLERKS* 421
TG G P F ++ ++ + ++
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMI 119
Query: 422 IWFWTESASSLTSVPGLQGFLIFHSFGGGPALG 520
+ GLQGFL+FHSFGGG G
Sbjct: 120 DSVLERIRRMADNCSGLQGFLVFHSFGGGTGSG 152
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 94.3 bits (224), Expect = 1e-20
Identities = 45/117 (38%), Positives = 69/117 (58%)
Frame = +1
Query: 253 QHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVL 432
++VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VL
Sbjct: 58 KYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVL 117
Query: 433 DRIRKLADQCTRSARIPDLPLLRWRSGSGFTSLLMERLSVDYGKKSKLEFGIYPAPQ 603
D +R+ A+ C L +GSG +LL+ ++ +Y + F + PAP+
Sbjct: 118 DVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPK 174
Score = 38.7 bits (86), Expect = 7e-04
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
MRE + + GQ G Q+G A W EHG+ G T + N +F+E G
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 257 TYP 265
P
Sbjct: 59 YVP 61
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 72.9 bits (171), Expect = 3e-14
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Frame = +1
Query: 229 FLQRDRSWQHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYT 402
F Q D + +++PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+
Sbjct: 52 FYQSDDT-RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YS 109
Query: 403 IGKEIVDLVLDRIRKLADQCTRSARIPDLPLLRWRSGSGFTSLLMERLSVDYGKKSKLEF 582
+ I + ++D I + AD L + +GSG S L+ERL+ Y KK +
Sbjct: 110 HAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTY 169
Query: 583 GIYPAPQ 603
++P Q
Sbjct: 170 SVFPNSQ 176
Score = 48.8 bits (111), Expect = 6e-07
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +2
Query: 80 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSET 244
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQS 55
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 312 ADLINNSRFKIDEDS--TGYVLPAPVSLKKVLKESSP 208
AD+IN SR+ ID S T + P+SL KE P
Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQP 491
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 408 KGNRRFGFGQNPQAR*PVYPVCKDS*SSTPSVEVRL 515
+G+ ++ F +P R + P+C+ S S+P ++ L
Sbjct: 955 QGHEQYNFSLSPSIRNKLSPICRPSQGSSPKLKNNL 990
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 581 NSSLDFLP*STERRSINKEVNPEPDLHRRS 492
+ S+D LP RRSI + + +PD ++RS
Sbjct: 607 HGSVDHLPSVKRRRSIANDFHGKPDYNKRS 636
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -2
Query: 345 FWMKQLSVCASADLINNSRF--KIDEDSTGYVLPAPVSLKKVLKESSPPPMVLSVGIW 178
F + + S +++N+ + KID GY S K + E + P + G+W
Sbjct: 205 FMAPYIELYGSTYIVSNTNYITKIDYSGRGYFRGTKNSFKATIFEKNEDPDYIVEGVW 262
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 175 WPDAHRQDHRGWRRFFQHFLQR 240
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -2
Query: 279 DEDSTGYVLPAPVSLKKVLKESSPPPMVLSVGIWPSG 169
++D T Y+ P P+ + L +++PP +V+ +G P G
Sbjct: 834 EKDLTKYLGP-PIYTSQRLYDTTPPGVVMGLGWTPMG 869
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 565 SCRSQRKDAPSIRK*TQSRTSTEGVEDQESLQTG 464
S + SIR ++SR+S+ G + Q S+Q+G
Sbjct: 98 SSQKSSNSRKSIRSQSRSRSSSVGSDSQASIQSG 131
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 66 LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 188
L+S +L+ P SR++ P S + STASSL P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 156 STASSLMARCPQTRPSGVETILSTLSSARP 245
ST SSL + ++PS T ST SSA P
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAP 202
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 130 ITDLDSGLANVYRDALTHFDLSF 62
+T +D GLA YRD TH + +
Sbjct: 146 VTMIDFGLAKKYRDFKTHVHIPY 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,260
Number of Sequences: 5004
Number of extensions: 57009
Number of successful extensions: 193
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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