Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1486
         (699 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4T5R1 Cluster: Chromosome undetermined SCAF9151, whole...    39   0.10 
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    36   0.96 
UniRef50_Q16XL2 Cluster: Acyl-CoA oxidase; n=2; Culicidae|Rep: A...    34   2.9  
UniRef50_O15254 Cluster: Acyl-coenzyme A oxidase 3, peroxisomal;...    34   3.9  
UniRef50_UPI0000583D73 Cluster: PREDICTED: hypothetical protein;...    33   6.7  
UniRef50_A3WEC1 Cluster: Transcriptional regulator araC family p...    33   6.7  
UniRef50_A0CF19 Cluster: Chromosome undetermined scaffold_174, w...    33   6.7  

>UniRef50_Q4T5R1 Cluster: Chromosome undetermined SCAF9151, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF9151,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 704

 Score = 39.1 bits (87), Expect = 0.10
 Identities = 14/31 (45%), Positives = 24/31 (77%)
 Frame = -1

Query: 615 YKWLTAFMLKMTYEKVERLRSEGRDPLQAKN 523
           Y+WL  F+L+ +  ++E+LR+EG+D  QA+N
Sbjct: 522 YRWLVCFLLEKSRTRLEQLRAEGQDEFQARN 552


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 35.9 bits (79), Expect = 0.96
 Identities = 18/28 (64%), Positives = 22/28 (78%)
 Frame = -1

Query: 195 RFRSGGRFYEALLLLGPVLSNTSVGAPW 112
           RFRS GRF EALLLLG VL+N+   +P+
Sbjct: 86  RFRSDGRFCEALLLLGLVLANSLRLSPY 113



 Score = 32.7 bits (71), Expect = 8.9
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = -3

Query: 349 TDPPDPLTVLLGTTSTCHXXXXXXXXXXXXXX*INPQTQPTEFIAGSSQ 203
           +DP D L+VLL  +ST +                NP+TQP +F+AGSSQ
Sbjct: 42  SDPRDSLSVLLDLSSTGYCPCRVRRAT-------NPKTQPMKFLAGSSQ 83


>UniRef50_Q16XL2 Cluster: Acyl-CoA oxidase; n=2; Culicidae|Rep:
           Acyl-CoA oxidase - Aedes aegypti (Yellowfever mosquito)
          Length = 773

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 609 WLTAFMLKMTYEKVERLRSEGRDPLQAKNE 520
           WL AF+L+ TY K   L+ +G+   +A+NE
Sbjct: 597 WLVAFLLEETYAKTVLLKQKGKSSFEARNE 626


>UniRef50_O15254 Cluster: Acyl-coenzyme A oxidase 3, peroxisomal;
           n=25; Eutheria|Rep: Acyl-coenzyme A oxidase 3,
           peroxisomal - Homo sapiens (Human)
          Length = 700

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 615 YKWLTAFMLKMTYEKVERLRSEGRDPLQAKNE 520
           YKWL  ++L+ TY+K+ + +  G    +A+N+
Sbjct: 518 YKWLVCYLLRETYQKLNQEKRSGSSDFEARNK 549


>UniRef50_UPI0000583D73 Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 1326

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = -2

Query: 461 TTPGRLYKTD-DQHPSGPYRYSVIPDPVDRIDVTLNTFYGSS---RSINGAFRYHKHLSP 294
           T  GR   TD D+  +G  RYS++ D V RID      Y ++   R I   + +      
Sbjct: 580 TIVGRAVATDADEGDNGRLRYSILTDAVFRIDEDSGRIYSTAELDREIQELYHFTVRAVD 639

Query: 293 SSLNPSLAT 267
             L+P  AT
Sbjct: 640 DGLSPKTAT 648


>UniRef50_A3WEC1 Cluster: Transcriptional regulator araC family
           protein; n=1; Erythrobacter sp. NAP1|Rep:
           Transcriptional regulator araC family protein -
           Erythrobacter sp. NAP1
          Length = 377

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = -2

Query: 407 RYSVIPDPVDRIDVTLNTFYGSSRSINGAFRYHKHLSPS 291
           R  ++ + V+ +DV L++ +GS  S N AF+ H  ++PS
Sbjct: 332 RSMILREEVNLLDVALSSGFGSKASFNRAFKAHAGVTPS 370


>UniRef50_A0CF19 Cluster: Chromosome undetermined scaffold_174,
           whole genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_174,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 439

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -2

Query: 452 GRLYKTDDQHPSGPYRYSVIPDPVDRIDVTLNTFYGSSRSINGAFRYHKHLSPSSLNPSL 273
           G +   D  H SG     VIP P    D+ + T + S R   G+  Y+K    + ++ S+
Sbjct: 208 GAILLADIAHTSGLMSAGVIPSPFPYADIVMTTTHKSLRGPRGSLIYYKLQYKNRIDESV 267

Query: 272 A 270
           A
Sbjct: 268 A 268


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 638,810,145
Number of Sequences: 1657284
Number of extensions: 11698013
Number of successful extensions: 24154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24140
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)