Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1486
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   0.59 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   5.5  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   7.3  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   7.3  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -2

Query: 428 QHPSGPYRYSVIPDPVDRIDVTLNTFYGSSRSINGAFRYHKHLSPSSLN 282
           Q P G   Y   P P DR+D+    +YG  + ++G  + ++  SPSS++
Sbjct: 73  QPPQG-MPYPRFP-PYDRMDIRAAGYYGPQQQMDG--QEYRPDSPSSMH 117


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 1   PTHTHNTKKIQHAVSFFSTYADSLEMLYQL 90
           PTH H   +I +    F+     +  LY+L
Sbjct: 378 PTHRHPQDEIPYCGKIFNLTTRQVRTLYKL 407


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 287 LNPSLATKGSTVN*PTDTAH*VYCRIFSVGHV 192
           L  +L TK   V  P D +   YC  ++ G V
Sbjct: 417 LTTTLCTKAGYVRDPDDCSIFYYCLAYNGGFV 448


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 630 TWCTLYKWLTAFML 589
           TW  LY+W+  + L
Sbjct: 160 TWRCLYRWIVLYTL 173


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,954
Number of Sequences: 336
Number of extensions: 2986
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)