Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1486
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    29   0.85 
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   7.9  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   7.9  

>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 5   HTHTTQKRYNTLYLFFLPMLIAL 73
           H H   +R NTL+ F+LP+++++
Sbjct: 247 HLHEYSRRSNTLFFFYLPIVMSI 269


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 491 YRLRRGQWALTTPGRLYKTDDQHPSGPYRY 402
           Y LRR     + PGR   TDDQ    P ++
Sbjct: 59  YGLRRSGRTRSNPGRYVDTDDQEDVFPSKH 88


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 422 PSGPYRYSVIPDPVD-RIDVTLNTFYGSSRSINGAFRYHKHLSPSSLNPSLATKGST 255
           PS P   S+  +     +D   NT +GS+ S+  A  + K+ SPS  + +  ++ ++
Sbjct: 594 PSSPNARSMAYEQHSFNLDDLSNTNFGSNNSLRHAKSFSKYYSPSHKDSNKTSRNTS 650


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,153
Number of Sequences: 5004
Number of extensions: 47369
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)