Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1486
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0073 + 19817084-19817388,19817777-19818023                       30   1.5  
03_05_1066 + 30098780-30098866,30099139-30099225,30099318-300994...    29   2.7  
07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874...    29   4.7  

>11_06_0073 + 19817084-19817388,19817777-19818023
          Length = 183

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 399 RHTRSCRPNRRHPKHVLRILQIH*RCF*VPQAPVTVLVEPVAC 271
           RHT++C P      H          C+ VPQA + V + PVAC
Sbjct: 102 RHTKNCPPQVASSPHFAA-------CYKVPQADMAVQLSPVAC 137


>03_05_1066 +
           30098780-30098866,30099139-30099225,30099318-30099439,
           30099580-30099656,30100135-30100259,30100497-30100589,
           30100840-30100932,30101016-30101213,30101337-30101441,
           30101535-30101600,30101808-30101885,30102144-30102233,
           30102325-30102448,30102590-30102741
          Length = 498

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 434 DDQHPSGPYRYSVIPDPVDRIDVTLNTFYGSSRSINGAFRYHK 306
           D  H SG     V+P P D  DV   T + S R   GA  +++
Sbjct: 240 DMAHISGLVAAGVVPSPFDYADVVTTTTHKSLRGPRGAMIFYR 282


>07_03_0561 +
           19485218-19485242,19485323-19486467,19487354-19487476,
           19487553-19487626,19487886-19487946,19488285-19488370,
           19488795-19488864,19489026-19489122,19489342-19489481,
           19490225-19490308,19490313-19490346,19491833-19491951
          Length = 685

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 427 NTLVGLIDTASYPIL*TESTSP*TRFTDPPDPLTVLLG 314
           NTLV L+D   Y +L   + SP T    PP PL   +G
Sbjct: 630 NTLVNLVDFCKYRLLTEANASPDT--ISPPKPLCSTVG 665


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,512,407
Number of Sequences: 37544
Number of extensions: 333211
Number of successful extensions: 608
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)