Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1486
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79601-2|CAB01886.1|  482|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF039052-2|AAF98629.1|  400|Caenorhabditis elegans Hypothetical ...    29   4.2  
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ...    28   5.6  
AC024772-2|AAF60537.2|  756|Caenorhabditis elegans Osm-9 and cap...    28   7.4  

>Z79601-2|CAB01886.1|  482|Caenorhabditis elegans Hypothetical
           protein K09A9.5 protein.
          Length = 482

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 215 GNKLSGLCLWVNLPSSPSSQATGSTRT 295
           G K++G CL  N+PS  ++ +T +T+T
Sbjct: 3   GRKIAGTCLRANVPSVAATSSTPATQT 29


>AF039052-2|AAF98629.1|  400|Caenorhabditis elegans Hypothetical
           protein T22D1.8 protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
 Frame = -3

Query: 697 NCRPKSDFCP----------NLLLANRIPNSADLVHTLQMADGVHAK 587
           NC P SDFCP          N L   +IPN   +   + + D +H K
Sbjct: 75  NCTPHSDFCPKMCVFENSSDNQLEELKIPNGVIMTQPVHLGDTLHLK 121


>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
           protein Y51B11A.1 protein.
          Length = 1079

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 403 TASYPIL*TESTSP*TRFTDPPDPLTVLLGTTST 302
           ++S PI  T +T+P T  T+PP   T  + TT+T
Sbjct: 68  SSSTPIKETTTTAPETTSTEPPSSSTTPVQTTTT 101


>AC024772-2|AAF60537.2|  756|Caenorhabditis elegans Osm-9 and
           capsaicin receptor-relatedprotein 4 protein.
          Length = 756

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 102 HFRAKLI*HLKAISIGRKKRYSVLYLFCVVCVC 4
           H   +L+ H K I+ GRK  ++ L +FC+  +C
Sbjct: 365 HLLEQLV-HHKWIAYGRKTLFAQLSMFCIYFIC 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,605,797
Number of Sequences: 27780
Number of extensions: 278462
Number of successful extensions: 562
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)