Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1486
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.7  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   4.9  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   4.9  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   4.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   4.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.5  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    21   8.5  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -2

Query: 347 GSSRSINGAFRYHKHLSPSSLNPSLATKGSTVN*PTDTAH*V-YCRIFSVGHVSDPVV 177
           G+  +I+G  R  K LSP+    ++  KGS ++  +D+ + V +  +  +G+   P V
Sbjct: 215 GTGGTISGIGRKLKELSPNIKIIAVDPKGSILDPSSDSQNEVGFYEVEGIGYDFIPTV 272


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 29  YNTLYLFFLPMLIALRCYISFALKCR 106
           Y++L  FF+P+L+    Y+   L  R
Sbjct: 199 YSSLGSFFIPLLLMSLVYLEIYLATR 224


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 29  YNTLYLFFLPMLIALRCYISFALKCR 106
           Y++L  FF+P+L+    Y+   L  R
Sbjct: 199 YSSLGSFFIPLLLMSLVYLEIYLATR 224


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 29  YNTLYLFFLPMLIALRCYISFALKCR 106
           Y++L  FF+P+L+    Y+   L  R
Sbjct: 199 YSSLGSFFIPLLLMSLVYLEIYLATR 224


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 250 INPQTQPTEFIAGSSQWVTFPIRW*ILRSTALTRAS 143
           INP T+  EF+ G  + +  P    I R +  T  S
Sbjct: 395 INPWTKKLEFVVGQHRILKGPANPDIFRVSCATEHS 430


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 250 INPQTQPTEFIAGSSQWVTFPIRW*ILRSTALTRAS 143
           INP T+  EF+ G  + +  P    I R +  T  S
Sbjct: 101 INPWTKKLEFVVGQHRILKGPANPDIFRVSCATEHS 136


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 29  YNTLYLFFLPMLIALRCY 82
           ++ +  FFLPML+ L  Y
Sbjct: 201 FSAMGSFFLPMLVMLYVY 218


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +2

Query: 2   PHTHTTQKRYNTLYLFFLPMLIALR 76
           P TH   +    ++L +LP ++ +R
Sbjct: 325 PRTHRMPQLIRKIFLKYLPTILMMR 349


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 314 YHKHLSPSSLNPSLATKGSTVN 249
           YH    P  L+P++ T  STV+
Sbjct: 5   YHVAQLPHHLSPNMPTMDSTVS 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,622
Number of Sequences: 438
Number of extensions: 3152
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)