Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1486
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37930.1 68417.m05363 glycine hydroxymethyltransferase / seri...    29   3.0  
At2g22690.1 68415.m02689 expressed protein                             29   3.0  
At2g02540.1 68415.m00193 zinc finger homeobox family protein / Z...    28   6.8  

>At4g37930.1 68417.m05363 glycine hydroxymethyltransferase / serine
           hydroxymethyltransferase / serine/threonine aldolase
           (SHM1) identical to serine hydroxymethyl transferase
           [Arabidopsis thaliana] GI:6899945
          Length = 517

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -2

Query: 434 DDQHPSGPYRYSVIPDPVDRIDVTLNTFYGSSRSINGAFRYHK 306
           D  H SG    +VIP P D  DV   T + S R   GA  + +
Sbjct: 257 DMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGAMIFFR 299


>At2g22690.1 68415.m02689 expressed protein
          Length = 381

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = -2

Query: 362 LNTFYGSSRSINGAFRYHKHLSPSSLNPSLATKGSTVN*PTDTAH*VYCRIF 207
           +N    S + ING    +      +LNP ++T    V   T T H +  + F
Sbjct: 64  INLLEASQKEINGVLTKYPKALDKTLNPDISTAYRNVKFDTHTVHQILAQFF 115


>At2g02540.1 68415.m00193 zinc finger homeobox family protein /
           ZF-HD homeobox family protein contains Pfam domain,
           PF04770: ZF-HD protein dimerisation region
          Length = 310

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 368 VTLNTFYGSSRSINGAFRYHKHL--SPSSLN 282
           + +NT YG+S   +G   +H H   +PSSLN
Sbjct: 10  IPINTSYGNSGGGHGNMNHHHHANSAPSSLN 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,726,881
Number of Sequences: 28952
Number of extensions: 256172
Number of successful extensions: 681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)