Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1485
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    28   0.97 
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    27   1.7  
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    27   1.7  
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    27   3.0  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   6.9  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         25   9.1  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   9.1  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 492 DGFVEVSHMTRFTNDSNELVYSLWMFMIGQ 581
           DGF   SH  +F ND  E  Y  W F+  Q
Sbjct: 199 DGFS--SHTYKFVNDKGEFYYCKWHFITNQ 226


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = +2

Query: 98  VVLSENPLDSPAIGLQKQPLFETNRNLFYKSIEDLIFKFRYKDAENHLIFALNTTLKIIN 277
           + L+EN      +  +KQ LF     ++      LIF  R  ++       L+T  + IN
Sbjct: 428 IALTENAQIYEELDFEKQRLFSACIEVYLSYCNTLIFLHRLNESVEGANICLDTARRAIN 487

Query: 278 LMSY 289
           ++ +
Sbjct: 488 VLKF 491


>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +2

Query: 8   ILNDVESLLQNKTQTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNLFYK 187
           I+N     L  K  T ++ +R  L D  + V    + +DS  +G     ++E  RNLFYK
Sbjct: 215 IVNSDSLALMKKGVTIVNTSRGGLIDTKALV----DAIDSGQVGGCAIDVYEGERNLFYK 270

Query: 188 SIEDLIFK 211
            + + + K
Sbjct: 271 DLSNEVIK 278


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 628 GMTNEYRISLAKKGGGCPIMNIHS 557
           G++NE  I L +K G CP + I+S
Sbjct: 105 GLSNENLIKLTQKSGECPPLYINS 128


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +3

Query: 342 LINVLITMYSVLIRRTSEQRRVWCKLLYFENERNLN*DFLFFGRVCADVNDGF 500
           L N+L+            + R  C LL+F+    L  ++ F   VC  +  GF
Sbjct: 623 LNNILVASLKFYFNLLHRKVRNGCALLHFKETEILEGEWDFLLAVCPHIEHGF 675


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -3

Query: 167 WFQTRVVFANRWLDYLMDFRSTPHDLPNL 81
           +F+ R++FAN   DY++ F ++  ++ +L
Sbjct: 423 FFEKRILFANTTNDYIVPFGTSAMEVSSL 451


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 556 EYTNSFESFVNRVIWETST 500
           +YTN + SF +R +W  ST
Sbjct: 527 DYTNVYNSFHDRRVWRWST 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,190
Number of Sequences: 5004
Number of extensions: 50933
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)