Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1485
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0279 + 15722183-15722273,15722927-15722986,15724053-157243...    27   9.4  
06_03_0943 - 26191798-26192244,26192802-26192966,26193515-261936...    27   9.4  
03_05_0832 - 28037047-28037315,28037428-28037530,28037664-280376...    27   9.4  

>11_04_0279 +
           15722183-15722273,15722927-15722986,15724053-15724318,
           15724771-15724886,15725173-15725246,15725330-15725393,
           15725473-15725509
          Length = 235

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 149 QPLFETNRN---LFYKSIEDLIFKFRYKDAENHLIFALNTTLKIINLMS 286
           Q +FE N +   L  + +  L+F  RY D   H I   NT +K++ L S
Sbjct: 42  QAVFECNSDGISLKTQELYALVFAARYLDLFIHFISLYNTVMKLVFLAS 90


>06_03_0943 -
           26191798-26192244,26192802-26192966,26193515-26193668,
           26194153-26194346,26194494-26194695,26194899-26195103,
           26195672-26195843
          Length = 512

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +2

Query: 485 CKRWVCRSLPYDAVHKRLERV-GVLA-VDVHDW 577
           CK W+ +S+P D  H  L RV GVL+  DV  W
Sbjct: 33  CKAWLVQSIPTDMPH--LRRVPGVLSTADVLQW 63


>03_05_0832 -
           28037047-28037315,28037428-28037530,28037664-28037695,
           28037788-28038005,28038145-28038260,28038514-28038757,
           28039129-28039216,28039513-28039588,28040126-28040164,
           28040347-28040405,28041292-28041529
          Length = 493

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 98  VVLSENPLDSPAIGLQKQPLFETNRNLFYKS 190
           VV++EN +D PA   + Q L +T R  FY+S
Sbjct: 399 VVITENGMDQPANLSRDQYLRDTTRVHFYRS 429


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,366,408
Number of Sequences: 37544
Number of extensions: 284828
Number of successful extensions: 586
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)