Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1485
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22790.1 68416.m02873 kinase interacting family protein simil...    33   0.21 
At2g27090.1 68415.m03255 expressed protein contains Pfam domains...    28   4.5  
At2g23030.1 68415.m02746 protein kinase, putative similar to pro...    28   4.5  
At2g17440.1 68415.m02012 leucine-rich repeat family protein cont...    27   7.8  

>At3g22790.1 68416.m02873 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1694

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 8    ILNDVESLLQNKTQTNIDKARLLLQDLASRV 100
            +  DV SL QN   TN+D   +LLQD+ +R+
Sbjct: 1347 LAEDVRSLEQNALSTNLDNGIVLLQDMKTRI 1377


>At2g27090.1 68415.m03255 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 743

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +2

Query: 8   ILNDVESLLQNKTQTNIDKARLLLQDLASRVVLSENPLDS 127
           IL ++ES  + K    IDK R +++DL SR+ ++ + +DS
Sbjct: 460 ILRELES--EGKGSQRIDKTRAVVKDLHSRIRVAIHRIDS 497


>At2g23030.1 68415.m02746 protein kinase, putative similar to
           protein kinase 3 [Glycine max] GP|310582|gb|AAB68961
          Length = 339

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -3

Query: 563 PQRVHQLVRVVCEPRHMGDFYKPIVYIGTD 474
           PQRV +++++V E R + +  +P+  +G+D
Sbjct: 288 PQRVEEIMKIVGEARTIPNLSRPVESLGSD 317


>At2g17440.1 68415.m02012 leucine-rich repeat family protein
           contains Pfam PF00560: Leucine Rich Repeats
          Length = 526

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/84 (21%), Positives = 41/84 (48%)
 Frame = -1

Query: 574 IMNIHSEYTNSFESFVNRVIWETSTNPSFTSAQTLPKKRKS*LRFLSFSK*RSLHQTRLC 395
           I N+  E  N  E+ +++++  +S+           + +KS +RF      +S  QTR  
Sbjct: 34  IQNVEKEDRNRLEA-IDKLVKTSSSEVPLELFNVFKEMKKSLVRF------QSTEQTREA 86

Query: 394 SLVRRIKTLYIVISTFIKR*ILCV 323
           + +  ++++++V    I+R   C+
Sbjct: 87  TKILDLESVHVVFDELIQRASFCI 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,861,958
Number of Sequences: 28952
Number of extensions: 249399
Number of successful extensions: 608
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)