BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1483 (568 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 28 0.83 SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 1.9 SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 27 2.5 SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.4 >SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces pombe|chr 2|||Manual Length = 780 Score = 28.3 bits (60), Expect = 0.83 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -3 Query: 242 NQCIRRSPSQPLLRVRRFG*LRSTTRPAVPYNHLPL 135 N+ + S SQPL F STT P+VP++ LP+ Sbjct: 183 NEAMNSSASQPLPNSTNFA---STTFPSVPFHPLPV 215 >SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces pombe|chr 2|||Manual Length = 2493 Score = 27.1 bits (57), Expect = 1.9 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -1 Query: 139 HYVSYLSFFTEYYVHMPKTVYH 74 HYV++L T Y +P+ VYH Sbjct: 62 HYVNFLRSVTPYSQSLPQIVYH 83 >SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosaccharomyces pombe|chr 1|||Manual Length = 503 Score = 26.6 bits (56), Expect = 2.5 Identities = 17/64 (26%), Positives = 26/64 (40%) Frame = +3 Query: 309 QKPWSRPPAWLDERSAAAYAISWTRLPTHRTSNARTRLLQGTGRTPFRT*WTEFRQQLGT 488 +KPWS L + Y W ++ H S + + L + P +RQ+L Sbjct: 247 EKPWSNQETLLLLEAIETYGDDWNQIALHVGSRTKEQCLIHFLQIPIE---DPYRQKLQG 303 Query: 489 DGSP 500 D SP Sbjct: 304 DFSP 307 >SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 281 Score = 25.8 bits (54), Expect = 4.4 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -1 Query: 232 FGEVLPSLCFGCVASANFVQRHVLLFHITIFHYVSYLS 119 F L LC+ +A F VLL + +F +SYL+ Sbjct: 15 FFRSLDMLCYAIIAQQYFQDPTVLLLLLKVFVQLSYLT 52 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,912,277 Number of Sequences: 5004 Number of extensions: 33748 Number of successful extensions: 88 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 88 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 240047038 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -