Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1483
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    28   0.83 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   1.9  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    27   2.5  
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.4  

>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 242 NQCIRRSPSQPLLRVRRFG*LRSTTRPAVPYNHLPL 135
           N+ +  S SQPL     F    STT P+VP++ LP+
Sbjct: 183 NEAMNSSASQPLPNSTNFA---STTFPSVPFHPLPV 215


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 139 HYVSYLSFFTEYYVHMPKTVYH 74
           HYV++L   T Y   +P+ VYH
Sbjct: 62  HYVNFLRSVTPYSQSLPQIVYH 83


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = +3

Query: 309 QKPWSRPPAWLDERSAAAYAISWTRLPTHRTSNARTRLLQGTGRTPFRT*WTEFRQQLGT 488
           +KPWS     L   +   Y   W ++  H  S  + + L    + P       +RQ+L  
Sbjct: 247 EKPWSNQETLLLLEAIETYGDDWNQIALHVGSRTKEQCLIHFLQIPIE---DPYRQKLQG 303

Query: 489 DGSP 500
           D SP
Sbjct: 304 DFSP 307


>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 281

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 232 FGEVLPSLCFGCVASANFVQRHVLLFHITIFHYVSYLS 119
           F   L  LC+  +A   F    VLL  + +F  +SYL+
Sbjct: 15  FFRSLDMLCYAIIAQQYFQDPTVLLLLLKVFVQLSYLT 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,277
Number of Sequences: 5004
Number of extensions: 33748
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)