Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1483
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0031 - 27183252-27183317,27183542-27184282                       29   2.0  
02_05_1236 + 35141404-35142731,35142753-35143089,35143228-351433...    29   2.0  
12_02_0974 + 24988147-24989253                                         29   2.6  
10_06_0159 + 11327059-11327285,11327920-11328142                       28   4.5  
07_01_0592 + 4409644-4410084                                           28   4.5  
04_03_0827 - 20108937-20109046,20109146-20109234,20109400-201095...    27   7.9  
03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169     27   7.9  

>05_07_0031 - 27183252-27183317,27183542-27184282
          Length = 268

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +1

Query: 481 WGPMGPPPPI*CVRRPSAPLPA*CLPGG 564
           WG   PPPP    R P   LP   LP G
Sbjct: 23  WGQPPPPPPTPAHRLPPTVLPVVALPAG 50


>02_05_1236 +
           35141404-35142731,35142753-35143089,35143228-35143305,
           35143395-35143703,35144449-35144572,35144620-35144789
          Length = 781

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -1

Query: 241 TSVFGEVLPSLCFGCVASANFVQRHVLL---FHITIFHYVSYLSFFTEYY 101
           TSVF   +   C GC+   N   + + L    HI   H++  LS F  +Y
Sbjct: 696 TSVFSVDIHCKCNGCIKKINDGMKRISLSEVVHIFCLHFIDELSKFRPWY 745


>12_02_0974 + 24988147-24989253
          Length = 368

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +2

Query: 488 RWVPRLPYDVCAALRPPSRHDASRGAD 568
           RW   LP  V +A RPPSR D    AD
Sbjct: 241 RWWKSLPPPVWSADRPPSRFDVLEAAD 267


>10_06_0159 + 11327059-11327285,11327920-11328142
          Length = 149

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
 Frame = +3

Query: 330 PAWLD-------ERSAAAYAISWTRLPTHRTSNARTRLLQGTG-RTPFRT*WTEFRQQLG 485
           PAWLD       E ++AA A  W RLP  R         +G   R  F + W E R Q G
Sbjct: 57  PAWLDGIIVLIDEIASAAAAGLWERLPAARLILTALVAREGCSCRQGFDSRWAERRAQSG 116

Query: 486 TDG 494
             G
Sbjct: 117 GGG 119


>07_01_0592 + 4409644-4410084
          Length = 146

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 567 SAPREASCREGGRRAAHTSYGRRGTHRSPIVVEI 466
           +A   A C  GGRR     +G RGT   P VV +
Sbjct: 2   AAAAAARCSRGGRRRRRPWWGGRGTGCEPRVVAV 35


>04_03_0827 -
           20108937-20109046,20109146-20109234,20109400-20109548,
           20109801-20109942,20110530-20110645,20111141-20111458
          Length = 307

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = +2

Query: 392 PQDLQCADEASSGDGADPVSDLMDRIST-TIGDR-WVPRLPYDVCAAL 529
           P  +  + +A++  GA+P+++L DR+ T   G R W+ + P  V AA+
Sbjct: 11  PLVVMASAQAAARGGANPLAELTDRVKTLEAGLRAWLAKQPTHVEAAV 58


>03_06_0245 - 32619410-32619510,32619698-32620668,32620694-32621169
          Length = 515

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 297 PWELQKPWSRPPAWLDERSA 356
           PWEL K  + P  WLD+ S+
Sbjct: 241 PWELTKTANLPNQWLDDESS 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,946,195
Number of Sequences: 37544
Number of extensions: 267865
Number of successful extensions: 833
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)