Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1482
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0326 - 24407201-24407374,24407397-24407460,24408266-244086...    27   9.7  

>04_04_0326 -
           24407201-24407374,24407397-24407460,24408266-24408689,
           24408885-24409057,24409178-24409275,24409723-24409853,
           24410053-24410174,24411091-24411245,24411976-24412081,
           24412328-24412419,24412499-24412620,24413444-24413544,
           24413636-24413849,24414173-24414311,24415228-24415584
          Length = 823

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +1

Query: 484 SLFLTSVVCNEGFSGQLHSVNFVSR 558
           S F+T++VCN+ FS +L S+N + R
Sbjct: 541 SQFVTTIVCNDEFSSRL-SINSILR 564


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,537,727
Number of Sequences: 37544
Number of extensions: 303787
Number of successful extensions: 495
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)