Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1482
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125959-2|AAD14732.1|  531|Caenorhabditis elegans Udp-glucurono...    29   2.1  
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z82078-4|CAB04945.1|  362|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AC006810-8|AAK84621.1|  364|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AF125959-2|AAD14732.1|  531|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein8 protein.
          Length = 531

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -3

Query: 381 PKAPVKRHVEYNS*YYDIVSQIPITSSFCQVIMYF---SVFCNCLFFVTIHETLELIS 217
           PK  + +H+E+   + ++ SQ+P  +    +  Y+     F + +F +T++ T ++IS
Sbjct: 462 PKLNLMKHLEFAMEFPNLRSQVPAINQMGLIAHYYLDVIFFLSLIFILTVYLTFKIIS 519


>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
           protein R10F2.1 protein.
          Length = 2779

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 300 FCQVIMYFSVFCNCLFFVTIHETLELISQGGW 205
           F  + + F  FC CL   T+ E+ ++ ++ GW
Sbjct: 12  FSLIFLIFPTFCQCLTKFTVPESAQIGTRIGW 43


>Z82078-4|CAB04945.1|  362|Caenorhabditis elegans Hypothetical
           protein W09D6.3 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +1

Query: 319 LGNYVIVLRIVFDVPLHWGLRECKMLSSVNYIKFLTLFEGLRTFTSK**SLNTHTSLFLT 498
           + N+++++ I+F  P  +G  +C M     YI    +F  +  F +   ++ +H S FL 
Sbjct: 17  VNNFLLIIFIIFKSPKQFGNYKCLMA----YISIFEIFYSILDFLTV-PTIYSHNSAFLV 71

Query: 499 SVVCNEG-FSGQLHSVNFVSRCA 564
            +  +   F   L  V  +S C+
Sbjct: 72  IIEKDSAIFPDSLLQVANISFCS 94


>AC006810-8|AAK84621.1|  364|Caenorhabditis elegans Hypothetical
           protein Y5H2B.1 protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 544 NFVSRCARIVKFHSYQFFITRLKKFN--FKKIDFL 642
           NF   C +IVK H     I  +  FN  FKK+DF+
Sbjct: 14  NFSRYCLKIVKVHIIWITIICIIYFNWRFKKLDFM 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,866,972
Number of Sequences: 27780
Number of extensions: 284529
Number of successful extensions: 465
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)