Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1482
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.83 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.8  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 6/24 (25%), Positives = 16/24 (66%)
 Frame = +1

Query: 481 TSLFLTSVVCNEGFSGQLHSVNFV 552
           +++ +T+ +C  G  G+ H+V ++
Sbjct: 136 SAVVITAAICTSGIVGRTHTVGYI 159


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 518 PSLHTTDVKKRDVCVLSDYYLEVNVL 441
           PSL++T+V     C    YY  + VL
Sbjct: 622 PSLNSTNVTLSTKCPYPSYYSYIGVL 647


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 520 FSGQLHSVNFVSRCARIVKFHSYQFFITRLKKFNFKK 630
           +   L +V+F+      VKF  +   + R +  NF+K
Sbjct: 371 YKNYLLNVSFIDAAGSEVKFDEHGDGLARYEILNFRK 407


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 520 FSGQLHSVNFVSRCARIVKFHSYQFFITRLKKFNFKK 630
           +   L +V+F+      VKF  +   + R +  NF+K
Sbjct: 461 YKNYLLNVSFIDAAGSEVKFDEHGDGLARYEILNFRK 497


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 281 YIITWQKLDVIGIW 322
           Y I W  + V+G+W
Sbjct: 172 YTIPWALMPVMGVW 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,642
Number of Sequences: 438
Number of extensions: 3350
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)