Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1482
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07540.1 68414.m00807 telomere-binding protein, putative simi...    31   0.66 
At1g02205.2 68414.m00154 CER1 protein identical to maize gl1 hom...    29   2.0  
At1g02205.1 68414.m00153 CER1 protein identical to maize gl1 hom...    29   2.0  
At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR...    29   3.5  
At2g42570.1 68415.m05268 expressed protein                             28   6.1  

>At1g07540.1 68414.m00807 telomere-binding protein, putative similar
           to telomere binding protein TBP1 [Nicotiana glutinosa]
           gi|23664357|gb|AAN39330
          Length = 622

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 530 CPLNPSLHTTDVKKRDVCVLSDYYLEVNVLRPSKSVRNF 414
           C + P L  T V   D+ + SDYY + + L+  +S RN+
Sbjct: 259 CKVPPKLKDTTVTNSDLDLKSDYYSKKHCLKSLRSERNY 297


>At1g02205.2 68414.m00154 CER1 protein identical to maize gl1
           homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467
           from [Arabidopsis thaliana]
          Length = 625

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -3

Query: 351 YNS*YYDIVSQIPITS---SFCQVIMYFSVFCNCLFFVTIHETLELISQGGWRIYV 193
           Y+S ++  +   PITS    F + I YF +F   L    + +T  +IS  G+ IY+
Sbjct: 158 YHSHHHSSIVTEPITSVIHPFAEHIAYFILFAIPLLTTLLTKTASIISFAGYIIYI 213


>At1g02205.1 68414.m00153 CER1 protein identical to maize gl1
           homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467
           from [Arabidopsis thaliana]
          Length = 580

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -3

Query: 351 YNS*YYDIVSQIPITS---SFCQVIMYFSVFCNCLFFVTIHETLELISQGGWRIYV 193
           Y+S ++  +   PITS    F + I YF +F   L    + +T  +IS  G+ IY+
Sbjct: 158 YHSHHHSSIVTEPITSVIHPFAEHIAYFILFAIPLLTTLLTKTASIISFAGYIIYI 213


>At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1085

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 445 F*GLQKVLEILCSSR*TTSCIPEGPSEAARRIQFL 341
           F  +++ LEILC S    S +P+G  E A+++  L
Sbjct: 346 FPSMEEALEILCLSAFKQSSVPDGFEELAKKVVHL 380


>At2g42570.1 68415.m05268 expressed protein
          Length = 367

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 244 SYKKQTVTKYTKIHNHLAKTGCNWYLGNYV 333
           +Y   T +   ++   LA   CNW+ GN+V
Sbjct: 26  AYINSTSSNNDEVRRELASGRCNWFRGNWV 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,816,963
Number of Sequences: 28952
Number of extensions: 257466
Number of successful extensions: 449
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)