Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1481
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    28   0.93 
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    26   5.0  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   6.6  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         25   8.7  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    25   8.7  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 495 DGFVEFSHMTRFTNDSNELVYSLWMFMIGQ 584
           DGF   SH  +F ND  E  Y  W F+  Q
Sbjct: 199 DGFS--SHTYKFVNDKGEFYYCKWHFITNQ 226


>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 122 LDSPAIGLQKQPLFETNRNLFYKSIEDLIFK 214
           +DS  +G     ++E  RNLFYK + + + K
Sbjct: 248 IDSGQVGGCAIDVYEGERNLFYKDLSNEVIK 278


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +3

Query: 345 LINVLITMYSVLIRRTSEQRRVWCKLLYFENERNLN*DFLFFGRVCADVNDGF 503
           L N+L+            + R  C LL+F+    L  ++ F   VC  +  GF
Sbjct: 623 LNNILVASLKFYFNLLHRKVRNGCALLHFKETEILEGEWDFLLAVCPHIEHGF 675


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = -1

Query: 170 WFQTRVVFANRWLDYLMDFRSTPHDLPNL 84
           +F+ R++FAN   DY++ F ++  ++ +L
Sbjct: 423 FFEKRILFANTTNDYIVPFGTSAMEVSSL 451


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 581 PNHEHPQRVHQLVRVVCEPRHMGELYKPIVYIG 483
           P+ E  +R H +VR+     H   L++ I Y G
Sbjct: 155 PSVEEIKRAHSVVRIAAIEVHYSMLFREIEYNG 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,714
Number of Sequences: 5004
Number of extensions: 48527
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)