Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1481
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506...    28   6.8  
03_05_0832 - 28037047-28037315,28037428-28037530,28037664-280376...    27   8.9  

>04_04_0964 - 29749624-29749649,29749742-29749945,29750036-29750634,
            29750742-29750826,29750914-29751562,29751568-29751643,
            29753891-29753957,29754097-29754998,29756579-29756790
          Length = 939

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 611  ISLAKKGGGLPNHEHPQRVHQLVRVVCE-PRHMGELYKPIVYIG 483
            I LA+ G  LP+H++  +VH   +  CE  R M     P + +G
Sbjct: 889  IGLARLGSMLPDHQNRVKVHSSTQCDCEIQREMRNGRLPDITVG 932


>03_05_0832 -
           28037047-28037315,28037428-28037530,28037664-28037695,
           28037788-28038005,28038145-28038260,28038514-28038757,
           28039129-28039216,28039513-28039588,28040126-28040164,
           28040347-28040405,28041292-28041529
          Length = 493

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 101 VVLSENPLDSPAIGLQKQPLFETNRNLFYKS 193
           VV++EN +D PA   + Q L +T R  FY+S
Sbjct: 399 VVITENGMDQPANLSRDQYLRDTTRVHFYRS 429


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,440,975
Number of Sequences: 37544
Number of extensions: 266090
Number of successful extensions: 532
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)