Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1481
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)                  30   1.7  
SB_19340| Best HMM Match : EGF_CA (HMM E-Value=3.8e-27)                28   6.9  
SB_34615| Best HMM Match : Keratin_B2 (HMM E-Value=9.1)                27   9.1  
SB_38678| Best HMM Match : C2 (HMM E-Value=3.1e-29)                    27   9.1  

>SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)
          Length = 1362

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 48  HKRISTKLDCCYKIWQVVWC*AKIH*IVQPSVCKNNPCLKPIETYF 185
           H R+S +L CCY    V  C  +    ++ +   NNPCL   +  F
Sbjct: 425 HVRVSLELVCCYSYVMVSSCSERC--TIRYNAMHNNPCLSRTQICF 468


>SB_19340| Best HMM Match : EGF_CA (HMM E-Value=3.8e-27)
          Length = 888

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +2

Query: 101 VVLSENPLDSPAIGLQKQPLFETNRNLFYKSIEDLIFKFRYKDAENHLIFAQHTTLKIIN 280
           V+  ++P+  P   + K    E+  + +  S+E L F +  K  E HL F +  T++I N
Sbjct: 436 VIDVDHPVIKPNYQITKLDKMESMGSSY--SLESLPFTY-LKTVEQHLPFQEDITIRIKN 492

Query: 281 LM 286
           LM
Sbjct: 493 LM 494


>SB_34615| Best HMM Match : Keratin_B2 (HMM E-Value=9.1)
          Length = 267

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 488 CKRWVCRVLPYDAVHKRLERVGVLAVDVHDW 580
           C  W+ RV+     HK L RV V+    H+W
Sbjct: 194 CHEWLSRVVVTSGCHKWLSRV-VVTSGCHEW 223


>SB_38678| Best HMM Match : C2 (HMM E-Value=3.1e-29)
          Length = 375

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 110 SENPLDSPAIGLQKQPLFETNRNLFYKSIEDLIFKFR 220
           +++PLD+ AI  Q    FET+  L+ +S E L+ + R
Sbjct: 66  AQSPLDAHAIKFQLLVQFETDMGLYCQSEEQLLSENR 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,498,667
Number of Sequences: 59808
Number of extensions: 334128
Number of successful extensions: 716
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)