Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1481
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040657-5|AAB95052.1|  317|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z81527-4|CAB04274.2|  388|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z54342-5|CAA91147.1|  457|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF039045-8|AAB94199.1|  300|Caenorhabditis elegans Hypothetical ...    28   6.1  
AF039045-7|AAB94207.1|  333|Caenorhabditis elegans Hypothetical ...    28   6.1  

>AF040657-5|AAB95052.1|  317|Caenorhabditis elegans Hypothetical
           protein T20H9.3 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 417 KLLYFENERNLN*DFLFFGRVCADVNDGFVEF---SHMTRFTNDSN 545
           K L + N R+++   + F R+   + DGF+E     H  R+ +D N
Sbjct: 11  KQLEYVNRRSVDKTEICFDRIMYQMKDGFIELDMDGHTIRYDDDEN 56


>Z81527-4|CAB04274.2|  388|Caenorhabditis elegans Hypothetical
           protein F35E12.4 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +2

Query: 89  LASRVVLSENPLDSPAIGLQKQPLFETNRNLFYKSIEDL-IFKFRYKDAENHLIFAQHTT 265
           L S    +   L++  +GL+   L ET   ++  SI ++ +F     D  N+L+++  TT
Sbjct: 148 LESNKFYTVKALENDQVGLKYGSLPET---IYDHSIYEIFVFDGETIDPSNYLVYSTSTT 204

Query: 266 LKIINL 283
           L ++NL
Sbjct: 205 LTLLNL 210


>Z54342-5|CAA91147.1|  457|Caenorhabditis elegans Hypothetical
           protein C08H9.10 protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 12/52 (23%)
 Frame = +2

Query: 164 ETNRNLFYKSIEDLIFKF------------RYKDAENHLIFAQHTTLKIINL 283
           ET+RN+F  SI   + K+            +Y+DA N+LIF Q      I L
Sbjct: 194 ETSRNVFVNSIVSFVQKYDIDGIEIFWTWPKYEDANNYLIFIQELRYAFIEL 245


>AF039045-8|AAB94199.1|  300|Caenorhabditis elegans Hypothetical
           protein F15E11.2 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 159 KGCFCKPMAGLSNGFSLNTTRLAKSCS 79
           KG +C+P + + NG   N+T L   C+
Sbjct: 218 KGKYCEPASAVENGKVCNSTSLTDGCT 244


>AF039045-7|AAB94207.1|  333|Caenorhabditis elegans Hypothetical
           protein F15E11.11 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 159 KGCFCKPMAGLSNGFSLNTTRLAKSCS 79
           KG +C+P + + NG   N+T L   C+
Sbjct: 251 KGKYCEPASAVENGKVCNSTSLTDGCT 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,235,148
Number of Sequences: 27780
Number of extensions: 265234
Number of successful extensions: 658
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)